Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1952 ATGGAGATTTCGTCAAAGTACTTCGCCGAGCTGGATCCGAGTATGTTCGAGCAGCACTCAGTGGATTATATGGCGTACGAGGTTAGCAACTTTCAGGATTTGTCGGGATGCGGCGACAGTTACTCATCTTTCACCTCCAAAAGAAGCCGTGATGAGTGGTTCCCAGTGGAGAGTCCAGAATCTGTTGTCCAACAAAGAGCAACCAAGCAACTCAAGACCATCAACAACACTATTAGCTGGACCTCTTGCACAACTACAATGGCTGATCCCATCGTCCCTTCCAACCATTCAGCTTCTAATTCTTCCTCCCAGATTATTTCTTTTGAGAATTTTAATAATTCTTCCCCAGATGTGGCTTCTCACCAATTTCACAGCTTGGACTCTAGTGCTGTTGTCAAGCCTAAAACCGAGACTGTTTTCTCTTCTGAAAACTTGGATTTCAGTGCTCCATTCTCCATTATTTCTCAGCCCACCTATGACCACAAGCCTGATTCCTTTTTGCTCCCACCTGAAAAGGAAACTGCCACCATTGCCAGAAATCCAATTCAAGCTCAAGATCACGTCATGGCCGAAAGAAAACGTAGGGAGAAGCTTAGCCAGCGGTTCATTGCTCTTTCCGCCATTCTTCCTGGTCTCAAAAAGATGGATAAGGCTTCAGTCCTAGGAGATGCCATCAACTATGTGAAACTACTGGAGGGACGCGTTAAGACTCTGGAGGAACAGTTAGCCAAGAAAGCAGTGGAAACCGCAGTGTTTGTTAATAGATATGTTCTTTATGCCGACGATGACGGCTCCTCCTCCGATGAAAATTCCAACATCGGCTCCGACCAGTCGCTGCCCGAAATCCAAGCAAGAGTTTCCGGCAAGGACGTCCTCATCAGAATCCACTGGGACAAACAAAACGGATGTTGCGCCACCATACTGTCCCGGCTACAACATCTCAACCTCACTGTCCAGAGTAGCAGCTTCTTGCCCTTCGGGGATACCTCCCTTGATATTACTATTGTTGCCCAGATGAACAATGAAGAGAGCTTGACAGCAAAAGATTTAGTAAGAAGCCTAAGGCAGGGTCTGGGGCAATTAATTTGA 1089 0.4665 MEISSKYFAELDPSMFEQHSVDYMAYEVSNFQDLSGCGDSYSSFTSKRSRDEWFPVESPESVVQQRATKQLKTINNTISWTSCTTTMADPIVPSNHSASNSSSQIISFENFNNSSPDVASHQFHSLDSSAVVKPKTETVFSSENLDFSAPFSIISQPTYDHKPDSFLLPPEKETATIARNPIQAQDHVMAERKRREKLSQRFIALSAILPGLKKMDKASVLGDAINYVKLLEGRVKTLEEQLAKKAVETAVFVNRYVLYADDDGSSSDENSNIGSDQSLPEIQARVSGKDVLIRIHWDKQNGCCATILSRLQHLNLTVQSSSFLPFGDTSLDITIVAQMNNEESLTAKDLVRSLRQGLGQLI 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1952 362 Pfam Helix-loop-helix DNA-binding domain 185 231 IPR011598 GO:0046983
Alju09g1952 362 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 182 231 IPR011598 GO:0046983
Alju09g1952 362 CDD bHLH_AtNAI1_like 184 253 - -
Alju09g1952 362 SMART finulus 188 237 IPR011598 GO:0046983
Alju09g1952 362 Gene3D - 174 246 IPR036638 GO:0046983
Alju09g1952 362 Coils Coil 228 248 - -
Alju09g1952 362 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 187 251 IPR036638 GO:0046983
Alju09g1952 362 PANTHER BHLH TRANSCRIPTION FACTOR 42 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1952 Alju-ChrAlju09 43339765 43341370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1952 95 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.520 1.20e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju09g1952 HLH 1.4e-08 No_clan