Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1943 ATGGATTCTCGGGAGCCACCTCAGTCTTCGCCTCCGTCACGCTCACAACAGCAACATTCATCGGCGCCACCACCAAACATTATGATGCCTCCTGGTTCTTTTCCCGCCGCCATGCCCAACCCTATCACTTCTTCCTTGATCAACCCCAATTCCTCGCCCATGTTGATGGCCCCTGCCACCGCCCGATTTCCGTTCCCCACATTTGCATCACAGTCCCGTTCTACTCCCCCTCCTGCCCCTCCCCTTCCTTCGCCTCCATCGAAGCCTTCAGAACCTCTGAGAACCACCACTTCTCCTTACGAAGGCTCCTCCTCTGCGTTGAGGCCTTGCGGGTTGAGTATTGATTCTCCGAAGAAGAAGAGAGGCCGGCCCAGGAAGTATTCGCCTGATGGTAGCACTACTTTGGGTTTGGGTCCTACGCCTTTGTCTTCTTCTGCCCCCGCTGATTTGAGCCCCACGTTAGATGAACCACCAGCTAAAAAGAGCAGGGGAAGGCCGCCGGGCTCTGGAAAGAAGCAACTGGATGCTCTTGGAGTTGGCGGGACATGCTTTACTCCTCACGTAATCTTGGTGAAAACTGGGGAGGACATTGCAGCAAAGATTACATCCTTTTGTGAAGAAGGGTCACGTTCGGTCTGTATTCTTTCTGCTCATGGTGCAGTCAGCAATGCCACCCTTCGACAACCAGCTACTTCTGGTGGTACAGTGTACTACGAGGGTCGATATGAGATTATATCTTTATCAGGTTCTTTCAATCCATCTGAAGAGGGTGGTTGTAGAACAGGTGGTATGAGTGTTGCTCTTGCGGGGACTGATGGAAAAATGGTGGGTGGTAGTGTTTCTGGAATGCTTGTTGCAGCATCACAAATACAGGTCATTGTGGGTAGTTTTATTGTGGAGGGGAAGAAAAAGTCGAGCTCAAAGGAGAAATCAGGACCCTCCCCAGCAGCAACGCCCTCAGGAACTCAAGTGTTGAATTTTGGCACTTCATCTGTGACTCCAACCAGTGCTACATCTCAAGGGGTTTCAAGTAATTCCTCTGATGAAAATGACGATAGTTCCTTGCAAAGGGGATCTGGATCAGGACCTGGGACTGGGACTGGAACCGGGTCTGGGACTGGGACCGGGTCTGGGCCTGGACTCTATAGTAGTATTAGCCAGCCCATTCATAACATGCAATGGAATCAACTATGGCATCCGCAGCGATGA 1209 0.5153 MDSREPPQSSPPSRSQQQHSSAPPPNIMMPPGSFPAAMPNPITSSLINPNSSPMLMAPATARFPFPTFASQSRSTPPPAPPLPSPPSKPSEPLRTTTSPYEGSSSALRPCGLSIDSPKKKRGRPRKYSPDGSTTLGLGPTPLSSSAPADLSPTLDEPPAKKSRGRPPGSGKKQLDALGVGGTCFTPHVILVKTGEDIAAKITSFCEEGSRSVCILSAHGAVSNATLRQPATSGGTVYYEGRYEIISLSGSFNPSEEGGCRTGGMSVALAGTDGKMVGGSVSGMLVAASQIQVIVGSFIVEGKKKSSSKEKSGPSPAATPSGTQVLNFGTSSVTPTSATSQGVSSNSSDENDDSSLQRGSGSGPGTGTGTGSGTGTGSGPGLYSSISQPIHNMQWNQLWHPQR 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1943 402 MobiDBLite consensus disorder prediction 38 55 - -
Alju09g1943 402 MobiDBLite consensus disorder prediction 310 387 - -
Alju09g1943 402 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 77 353 IPR039605 GO:0003680
Alju09g1943 402 ProSiteProfiles PPC domain profile profile. 181 319 IPR005175 -
Alju09g1943 402 Pfam Plants and Prokaryotes Conserved (PCC) domain 186 297 IPR005175 -
Alju09g1943 402 Gene3D - 186 311 - -
Alju09g1943 402 MobiDBLite consensus disorder prediction 71 92 - -
Alju09g1943 402 MobiDBLite consensus disorder prediction 133 150 - -
Alju09g1943 402 MobiDBLite consensus disorder prediction 303 387 - -
Alju09g1943 402 MobiDBLite consensus disorder prediction 1 176 - -
Alju09g1943 402 SMART AT_hook_2 160 172 IPR017956 GO:0003677
Alju09g1943 402 SMART AT_hook_2 118 130 IPR017956 GO:0003677
Alju09g1943 402 MobiDBLite consensus disorder prediction 1 23 - -
Alju09g1943 402 SUPERFAMILY AF0104/ALDC/Ptd012-like 183 298 - -
Alju09g1943 402 CDD DUF296 185 297 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1943 Alju-ChrAlju09 43223785 43227803 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1943 111 328 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 52.823 5.85e-68 220
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g1943 09 43223785 43227803 Alju12g0363 12 4429749 4435767 CCT