Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1917 ATGGTTTGTACTGCAAATGATTTACAAAGCTGGAAAGATTTTCCCAAGGGACTTAGGGTTCTTCTCCTTGATGGGGACACCAATTCTGCTGCCGATATGAGGGCAAAGCTTGAGGCCATGGACTATATTGTTTCTATATTCTGCAATGAAAATGAAGCCTTATCGGCGATCTCAAGCAAACCTGAAGGCTTCCATGTTGCCATTGTGGAGGTTAGTACAAGCAATAACCAGGGGGTTTTCAAATTTCTTGAGCATGCCAAGGACTTGCCAACCATTATGACTTCAAATGATCATTGCCTTAGCACCATGATGAAGTGTATAGCACTTGGCGCAGTTGAGTTCCTAAGAAAACCACTCTCTGAGGAAAAGCTCAGGAATATCTGGCAGCATGTGGTTCACAAGGCATTTAATGCTGGGGCAACTGTCCTGCCTGAATCACTAAAACCCATCAAAGAATCCGTGGTATCGATGTTGCAGCTCCAAACAAACAACAAGGAACAGCAAAGTAAAATCTCTATAGATATGGAGAAAGTATTGAGGTTTAGTGAAAATGACCATGAGCTATCATCTGGGATCGATAATAAATACCCGGCTCCTTCAACTCCACAATTAAAACAAGGGGCTAGATTACTGGATGATGGAGATTGCCATGAACAGACTCATTGCTTGACTGAGAAAGAGAGTGGAGAACCGGATGGGGAAACTATATCTGTCGAAACTACATGTGGGAATTCAAATTCTGAGGGCGCTACGCCTCAACCAAGTAAGCCTGAAACGACCCTAGTCAAGAAGGAAGAGGACTTTGCCAATGGTTCTAAGAGTGAGAGTGATGTTTCTACACATATTCATGATGGAAATTTTGTCAGCAGCAATGATGATAGTACTCCATCTCCAAAAAAAGTTGGTGTTCTCAGTGATGCATGTGAGATCACAGCTAATAAAAAGAAATCAAAGAAGATGAAGGTAGACTGGACGCCGGAACTGCACAACAAATTTGTTCAGGCAGTGGAACAACTTGGTATTGATCAGGCCATACCTTCTCGAATACTGGAGCTAATGAAAGTGGAGGGCTTGACTAGGCATAATGTGGCTAGCCATCTTCAGAAATATAGAATGCACAAGAGACATATCTTGCCCAAGGAAGAAGATCGAAGATGGCCAAATCAAAGAGATATAATGCAAAGGAGCTATTATGTACCGAGACCAACTATGGCCTATCCTCCATATCATTCTAATCACACCTTATCTCCAGCTCCTATATATCCTATGTGGGGACAACCAGGAAGTCAACCGGCTGGTGTACAGATGTGGGGCCCCCCTAACTATCACATATGGCAGCCTTTTCCAGGGATGCAGGCAGAAGAAGCATGGGGTTGCCCCGTGTTGCCACCTTCTCAAAATCCGTGCTTTTTCCACACTCAACATACACCTGGATTGTGTAGTGCTAATAACGTTGGGTATAACCCAAGCATGCCTCCAAGTTCTTTAGAGCATCATCCGGCAGATGAAGTTGTTGATAAGGTTGTAAAGGAGGCAATAAGCAAGCCATGGCTACCCTTGCCCTTAGGACTCAAACCTCCTTCCTCAGATAGTGTATTGGCTGAACTCTCTAGGCAAGGCATATCTACCATCCCTCGTAGTTTTAAATCTACATAG 1656 0.4372 MVCTANDLQSWKDFPKGLRVLLLDGDTNSAADMRAKLEAMDYIVSIFCNENEALSAISSKPEGFHVAIVEVSTSNNQGVFKFLEHAKDLPTIMTSNDHCLSTMMKCIALGAVEFLRKPLSEEKLRNIWQHVVHKAFNAGATVLPESLKPIKESVVSMLQLQTNNKEQQSKISIDMEKVLRFSENDHELSSGIDNKYPAPSTPQLKQGARLLDDGDCHEQTHCLTEKESGEPDGETISVETTCGNSNSEGATPQPSKPETTLVKKEEDFANGSKSESDVSTHIHDGNFVSSNDDSTPSPKKVGVLSDACEITANKKKSKKMKVDWTPELHNKFVQAVEQLGIDQAIPSRILELMKVEGLTRHNVASHLQKYRMHKRHILPKEEDRRWPNQRDIMQRSYYVPRPTMAYPPYHSNHTLSPAPIYPMWGQPGSQPAGVQMWGPPNYHIWQPFPGMQAEEAWGCPVLPPSQNPCFFHTQHTPGLCSANNVGYNPSMPPSSLEHHPADEVVDKVVKEAISKPWLPLPLGLKPPSSDSVLAELSRQGISTIPRSFKST 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1917 551 Pfam Myb-like DNA-binding domain 322 371 IPR001005 -
Alju09g1917 551 Gene3D - 18 140 - -
Alju09g1917 551 NCBIfam myb-like DNA-binding domain, SHAQKYF class 319 374 IPR006447 GO:0003677
Alju09g1917 551 MobiDBLite consensus disorder prediction 222 300 - -
Alju09g1917 551 FunFam Two-component response regulator 315 378 - -
Alju09g1917 551 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 547 IPR044825 GO:0003700|GO:0045893
Alju09g1917 551 MobiDBLite consensus disorder prediction 234 258 - -
Alju09g1917 551 SMART REC_2 18 128 IPR001789 GO:0000160
Alju09g1917 551 CDD REC_typeB_ARR-like 20 132 - -
Alju09g1917 551 SUPERFAMILY Homeodomain-like 318 376 IPR009057 -
Alju09g1917 551 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 316 375 IPR017930 -
Alju09g1917 551 MobiDBLite consensus disorder prediction 186 206 - -
Alju09g1917 551 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Alju09g1917 551 MobiDBLite consensus disorder prediction 281 298 - -
Alju09g1917 551 Gene3D - 315 377 - -
Alju09g1917 551 MobiDBLite consensus disorder prediction 259 280 - -
Alju09g1917 551 FunFam Two-component response regulator-like APRR2 17 143 - -
Alju09g1917 551 SUPERFAMILY CheY-like 16 134 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1917 Alju-ChrAlju09 43016935 43021406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1917 1 547 Response Regulator Gene Family AT4G18020 48.870 1.97e-143 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Alju09g1917 Myb_DNA-binding 2.2e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g1917 09 43016935 43021406 Alju12g0389 12 4711885 4716241 CCT