Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1890 ATGTATAGCGGTAGGGGTGTGGCGGGAAGAACTCGGTCTAGACAAGGAATCGCTTGGAAACAATACTTTGATAATAAGCGTAGGAAACAGCATGAGGTTGAGGTAATTTCATCTGATGAAGAATGGGGCTCTGGCGATACTGTATTTGATGATGACGATGATGTGAGTTTAATCAAAGATATCAAACCAGAGGAAGACAATGAGGAGGAAATGTCAGAAAGAATTCAGCCTAGACAAGTACTTAATGAGAGGGAGGTGGAAATGGCGTCTCAAGAAGAATGCTCTTCAAGCGACACTACTGAATCTTCTGATGATGATGGTGGTGGTGGTGGTGGTGGTGATTATGAAGCTTCACCACGCGGTGGCGACGAAGGCGATGTCGAGAAAGATCTCACCGGAAGCGGAAGCCGAAGCAGAAGCTCAGCTACACCACCACATGGTGACAATGACGTTGCGAAAGAAGTTACCAGAAGCAGAGGCAGAGGTGTAGCTAGTAGAACACGTTCTCATTTTCGTGCTTCGAAATTGAAAAATACAAAAGTAGGGACATTCAATAATCCCATAAGTCTTGATGATGAGGATGAGCAAGAGAAAGAGGAGCATGAAACAACTATGAAGCCTGTTGATGAGGATTTAGCTTCCTCCTCAACCTCAAGTGATGAGGATGAAAGTCCAAAAGTTTCCCGTAAACGGAAAAGAAAAATGTTTGATGATTTCAAGATTCGTCCGGAGCATCTCCCTGGTGAGGGAGTGGTGCCTCTTGAGAACTCAACTTCCTCAAGCGTTGAGGAAAGAAATCCGAAAGTTATGGCGAAACCACTAAAGATGTCATCGCCACCGTTGAAATTAGAGTCTGAGGATATGTTAGAAAGACTATGGGCTGAGAGGAACATGGCTGACGAAAATCCACAAGAAACCATGAATAAGGCGTCACAGTCGCCGGAGAGTTCAGAGCCTGAGGAAGAAGATGGTAAACTATGGTCTGTTAGTCCTTCTGAAGATGAGGAAGGAATTCCAGAAGACATCAATCCAATTCTATCATCGAAGTCCACTTTTGGGACTAAGGCACCACAAGCTCTTGAGAAATCAGAGTCTGAGAACGAATCTGATCTCCTATGGGCTGAGCTGCACGACTGTTTACGACATTGTGAAGAAGATACTGATGATGAAGATGCTTCTCATCAGGTGGAAAATGGTCATTCTAATGACCCAAATCCGGAAGGTGAAGAGAGTATAGCTGGTCGTTGTGGACGAGGAGATCATGTTCCTGCAATGAACGAAGAAATTGGTTTAGTGTGTATACATTGCAGGCATATAATTCGGGACATTAAGGATTGTGACCCTGAGTTTGGCAAGCATCCATCGGGAAGACCAGGTGGGAGATACTCATACCGTCCGGGGGATTCTGACGACTCTTTCTCTGACGACTCAGAGCATGAAAATTCTGGGATTGATGATAAATCTAGGTTTCTTACCTATGCTTCCACTGGAACTGTGTGGGATATAGTTCCAAGAGCAAAGAAGAGGATGTACAGTCACCAAAAGGAAGCCTTTGAATTTCTCTGGAAGAATCTAGCTGGTGGAATTGTTCTTGACCAGTTGGAAAAGCAATTAGATTTTTCCGGTGGAGGTGGCTGCATAATTTCTCATGCGCCTGGCACTGGCAAAACTTTCCTCACCATTGCTTTTCTCAAGGCCTTCATAAGGAGATACCCTAGTTGCAGGCCCATGATCATCGCTCCCTGCAACATTCTTAATACATGGGAGAGAGAATTAAAGAAGTGGCAAGTGGGTGATTCTGTTCCTTTTCACAATCTGAACAAGCTTGAACTTTCTGGGGAGGAGACTCAATCTGCCATAAGCCGTTTTCGTCCTCGGAGGCGCGGCCGTAAACCCAATATAAATGCAATCCGACGGGTTAAGGCTTGTTCATGGAGAGAGGCTAAAAGCATATTAGGAATCAGCTACACATTATTTGATAGGCTTGCTAGAAAGGGCTATGATGAAGTGGTAAAGAAAGCCCTTTTTGAACTTCCTGGGCTGGTGGTTCTTGATGAGGGCCACACACCTCGCAATGCTAGGAGTTGCCTGTGGGAAGCATTGTCTAATATAAAGACAAAGAGACGAATCATACTCTCTGGGACTCCTTTCCAGAATAACTTTACTGAGCTTAACAATACCCTCCGCTTGTCCAAACCAAATGTAACTAAAGGGAATTTGGAATTTCTGCTTAAATCATATGACAAAGTAGAGAGCCATGGTGAAAGAACTCAGGTCATTGCTCAAATCAGAGACGTGATCAAACCGTTTGTGCATGTGCATAAGGGTACTGTGCTGGAAGAGAAACTTCCTGGGTTGAAGGAGTCAGTAGTTAGCTTAAAGCCCTCTCGGACGCAGATGTTCATTTTTGAGTACATTCAAAAGTTAAGGGAGGGCCAAGAGGGATGCTCAAACTGGTTTAGATTTGAACATTTGATGTCTGTATCTTCTGTGCATCCCTCTCTCTCTGTTGACGAGCTCACTCAATTTCCAGAAAGTGGAAGAGGGCAATTGAATGCTATATTAGCAACACTAGATTTGTCCCCAGAGGCTGGGGTTAAAACAAAGTTTGTATTGGACTTCATCAAGCAAAGCGAGCGCATGAAGGAAAAGGTTCTGATCTTTAGCCAGTACCTTCATCCGTTGGAATTTTTGGCCGAGCAGATCAACTCTCGCTTTCATTGGAGAGAAGGAGAGCAGATGATGATCATTCATGGAAAGACCCCTGAAGTGACACGACAATCTTCCATAGATGCCTTCAATGATCCCAGTAGCAAAGCTAGGGTGATGTTAGCATCAACCAAGGCTTGTTATGAAGGGATCAATCTGGTTGGAGCTTCAAGAGTCATTTTGCTTGATACTTTATGGAATCCCTCAGCAGAAAGGCAAGCTGTGTCTCGTGCTTATCGGCTTGGACAGAAGAAAGTTGTGTACACTTATCGTCTCATAACTGCTGGGACATGGGATGAACAGAAGCTTTGCATTCAAGCTGAGAAGGATGAATTGTCTGAGTTGGTCTTTTCTGCTTCCCATGAAGCTGCCCATCGCCAGAATATGTCTCCCAATGGTTTTGAAGATAAACTTTTGGAAAAGATGGGTCCTAAATTTGGGACGAAATTCACCAAGAGGGGAGTTACTATCTTATTTCAAATTGTGGCTCAAAGATACTCTGTTTATATTGAATCAGGATGGCTTTGCCAGGATGTTGTTGATATTATCAAGCTCATTTCCATCATTTGGCGTAGGAGAAATACAATCCTCATAATTGGTAATCAAGGAAATCAGACTCTAAGATATAGAGGCCCAGAACAAAGCTTTTCTCATGAAGATTGGAGTAAATTTGATGCCTTGCTACCAAACGACGTGATGGGACAGATTGCAAAAATGGCCCCACCAGCTGCGCAGGATTCTCCAGCTTCTCGGCACTGGCTTTCTAAAGAGAGATCAATGGAATGA 3495 0.4395 MYSGRGVAGRTRSRQGIAWKQYFDNKRRKQHEVEVISSDEEWGSGDTVFDDDDDVSLIKDIKPEEDNEEEMSERIQPRQVLNEREVEMASQEECSSSDTTESSDDDGGGGGGGDYEASPRGGDEGDVEKDLTGSGSRSRSSATPPHGDNDVAKEVTRSRGRGVASRTRSHFRASKLKNTKVGTFNNPISLDDEDEQEKEEHETTMKPVDEDLASSSTSSDEDESPKVSRKRKRKMFDDFKIRPEHLPGEGVVPLENSTSSSVEERNPKVMAKPLKMSSPPLKLESEDMLERLWAERNMADENPQETMNKASQSPESSEPEEEDGKLWSVSPSEDEEGIPEDINPILSSKSTFGTKAPQALEKSESENESDLLWAELHDCLRHCEEDTDDEDASHQVENGHSNDPNPEGEESIAGRCGRGDHVPAMNEEIGLVCIHCRHIIRDIKDCDPEFGKHPSGRPGGRYSYRPGDSDDSFSDDSEHENSGIDDKSRFLTYASTGTVWDIVPRAKKRMYSHQKEAFEFLWKNLAGGIVLDQLEKQLDFSGGGGCIISHAPGTGKTFLTIAFLKAFIRRYPSCRPMIIAPCNILNTWERELKKWQVGDSVPFHNLNKLELSGEETQSAISRFRPRRRGRKPNINAIRRVKACSWREAKSILGISYTLFDRLARKGYDEVVKKALFELPGLVVLDEGHTPRNARSCLWEALSNIKTKRRIILSGTPFQNNFTELNNTLRLSKPNVTKGNLEFLLKSYDKVESHGERTQVIAQIRDVIKPFVHVHKGTVLEEKLPGLKESVVSLKPSRTQMFIFEYIQKLREGQEGCSNWFRFEHLMSVSSVHPSLSVDELTQFPESGRGQLNAILATLDLSPEAGVKTKFVLDFIKQSERMKEKVLIFSQYLHPLEFLAEQINSRFHWREGEQMMIIHGKTPEVTRQSSIDAFNDPSSKARVMLASTKACYEGINLVGASRVILLDTLWNPSAERQAVSRAYRLGQKKVVYTYRLITAGTWDEQKLCIQAEKDELSELVFSASHEAAHRQNMSPNGFEDKLLEKMGPKFGTKFTKRGVTILFQIVAQRYSVYIESGWLCQDVVDIIKLISIIWRRRNTILIIGNQGNQTLRYRGPEQSFSHEDWSKFDALLPNDVMGQIAKMAPPAAQDSPASRHWLSKERSME 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1890 1164 CDD SF2_C_SNF 867 996 - -
Alju09g1890 1164 Pfam SNF2-related domain 543 807 IPR000330 GO:0005524|GO:0140658
Alju09g1890 1164 Gene3D - 487 772 IPR038718 -
Alju09g1890 1164 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 537 734 IPR014001 -
Alju09g1890 1164 MobiDBLite consensus disorder prediction 1143 1164 - -
Alju09g1890 1164 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 38 1046 IPR044567 GO:0080188
Alju09g1890 1164 MobiDBLite consensus disorder prediction 468 484 - -
Alju09g1890 1164 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 873 1045 IPR001650 -
Alju09g1890 1164 Gene3D - 784 1055 IPR027417 -
Alju09g1890 1164 MobiDBLite consensus disorder prediction 344 360 - -
Alju09g1890 1164 Pfam Helicase conserved C-terminal domain 868 985 IPR001650 -
Alju09g1890 1164 MobiDBLite consensus disorder prediction 385 419 - -
Alju09g1890 1164 MobiDBLite consensus disorder prediction 447 484 - -
Alju09g1890 1164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 500 744 IPR027417 -
Alju09g1890 1164 MobiDBLite consensus disorder prediction 52 91 - -
Alju09g1890 1164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 680 1028 IPR027417 -
Alju09g1890 1164 MobiDBLite consensus disorder prediction 315 330 - -
Alju09g1890 1164 MobiDBLite consensus disorder prediction 35 369 - -
Alju09g1890 1164 MobiDBLite consensus disorder prediction 284 298 - -
Alju09g1890 1164 MobiDBLite consensus disorder prediction 222 245 - -
Alju09g1890 1164 SMART ultradead3 506 743 IPR014001 -
Alju09g1890 1164 MobiDBLite consensus disorder prediction 119 133 - -
Alju09g1890 1164 SMART helicmild6 896 985 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1890 Alju-ChrAlju09 42686985 42691861 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1890 871 1015 RAD5 or RAD16-like Gene Family AT5G43530 34.667 6.49e-16 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Alju09g1890 SNF2_N 1.3e-24 CL0023