Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1868 ATGCTTACCAGCTCTCGCGAGGACACCGGCGTTCGGCTTCGTCAGAGGATCAACACAGTGCACAGCAGACCGGCTTCATCACCAACAATGAGCTTTAAATTCGCCCAGAAACGGCAGAAGATAATATCAGTTGAAGGTTATCACGGAGGCACCGCCGGAAGTTGCTCAGTCACCGGAGTTGCGGACATAAGTTCAGCGAGAAGAGATTTCGGAGCAGCTCTGTTGGTTGAGGTTTGTTCACATCTCAATGGTGCCAGAGATTCGGAGAGAAAAATTGCTATTGTTGCAGGTGGTGTCAGGCATGCACATGGGAGGCTACTGTGTAACGGTAAAAAAGAGGATCCAATGTGCATTGCTGAAAACTCTGGGCTTCACAGAATGGGGCTTTATTCTAAATACCAAGTGGTCCTTGCTTGTGTGTTGCTCTTGCCTGCTCTATGCCTCTCCCAATTCACAGACTCCAGAGCCACCTTTTACACTACCTCTGATGGCAGTGGAACCCCAACCGGAGCTTGTGGATTTGGCGATTACGGGAGGACTGAAAACTCAGGGAGGGTGGCCGGAGTGTCTGATGCGCTATGGAGAGGCGGCGCTGGATGCGGTGCCTGCTACCAAGTAAGGTGCAAGGATACACAATTATGCAGTACGGAGGGGGTGACGCTAGCGGCAACAGACATGGGTTCAGGAGACAGAACAGACTTCGTTATGAGTCTTAACGGTTTCTTAAGACTTGGAGTGAACTCAGCTGCCTCGGAACAGCTCAGGAAAAACGGCACCGTTGACGTCCAATACAGGAGGGTCTCATGCGCTTTCGATGGATCCAACGTTAAGATCAAGATCCACGAGAACAGCAGATTCCCTGACTACCTCGCTATCGCCGTCATCTACGTGCCTGTCTCCAACGACGTCGTTGCCCTTCAGATATCCAATAATAATGGTGGGAATTGGAGCCCACTGGGGAGATCGTTTGGGGGAGTGTTTGATTTAGCAAACGCGCCACGTGGACCATTTAAGGTGAGGGTGCAATTCAGTGGGAGCCAGACTTGGGTGGAGTCGCCCAACAATGTCATTCCAGCTGACTGGAACGTTGGAGCTATCTATGACTCTGGAATTCATGCCTAA 1122 0.5107 MLTSSREDTGVRLRQRINTVHSRPASSPTMSFKFAQKRQKIISVEGYHGGTAGSCSVTGVADISSARRDFGAALLVEVCSHLNGARDSERKIAIVAGGVRHAHGRLLCNGKKEDPMCIAENSGLHRMGLYSKYQVVLACVLLLPALCLSQFTDSRATFYTTSDGSGTPTGACGFGDYGRTENSGRVAGVSDALWRGGAGCGACYQVRCKDTQLCSTEGVTLAATDMGSGDRTDFVMSLNGFLRLGVNSAASEQLRKNGTVDVQYRRVSCAFDGSNVKIKIHENSRFPDYLAIAVIYVPVSNDVVALQISNNNGGNWSPLGRSFGGVFDLANAPRGPFKVRVQFSGSQTWVESPNNVIPADWNVGAIYDSGIHA 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1868 373 PRINTS Expansin/Lol pI family signature 355 369 IPR007118 GO:0005576
Alju09g1868 373 PRINTS Expansin/Lol pI family signature 257 273 IPR007118 GO:0005576
Alju09g1868 373 PRINTS Expansin/Lol pI family signature 190 208 IPR007118 GO:0005576
Alju09g1868 373 PRINTS Expansin/Lol pI family signature 150 165 IPR007118 GO:0005576
Alju09g1868 373 PRINTS Expansin/Lol pI family signature 168 186 IPR007118 GO:0005576
Alju09g1868 373 SUPERFAMILY Barwin-like endoglucanases 138 273 IPR036908 -
Alju09g1868 373 Pfam Lytic transglycolase 188 264 IPR009009 -
Alju09g1868 373 Pfam Expansin C-terminal domain 276 358 IPR007117 -
Alju09g1868 373 Gene3D - 145 269 IPR036908 -
Alju09g1868 373 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 169 274 IPR007112 -
Alju09g1868 373 SMART dpbb_1 186 264 IPR007112 -
Alju09g1868 373 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 288 369 IPR007117 -
Alju09g1868 373 PANTHER EXPANSIN-B3 141 371 - -
Alju09g1868 373 CDD DPBB_EXLB_N 152 269 - -
Alju09g1868 373 Gene3D - 271 373 IPR036749 -
Alju09g1868 373 SUPERFAMILY PHL pollen allergen 275 369 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1868 Alju-ChrAlju09 42453052 42456360 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1868 135 371 Expansin Gene Family AT4G17030 46.667 2.00e-70 219