Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1864 ATGGGGATTTATTCTAAATACCAAGTGGTCCTTGCCTGTGTGTTGCTCTTGCCTGCTCTATGCCTCTCCCAATTCACAGACTCCAGAGCCACCTTTTACACTACCTCTGATGGCAGTGGAACCCCAACCGGAGCTTGTGGATTTGGCGATTACGGGAGGACTGAAAACTCAGGGAGGGTGGCCGGAGTGTCTGATGCGCTATGGAGAGGCGGCTCTGGATGCGGTGCCTGCTACCAAGTAAGGTGCAAGGATACACAATTATGCAGTACGGAGGGGGTGACGATAGCGGCAACAGACATGGGTTCAGGAGACAGAACAGACTTCGTTATGAGTCTTAACGGTTTCTTAAGACTTGGAGTGAACTCAGCTGCCTCGGAACAGCTCAGGAAAAACGGCACCGTTGACGTCCAATACAGGAGGGTCTCATGCGCTTTCGATGGATCCAACGTTAAGATCAAGATCCACGAGAACAGCAGATTCCCTGACTACCTCGCTATCGCCGTCATCTACGTGCCTGTCTCCAACGACGTCGTTGCCCTTCAGATATCCAATAATAATGGTGGGAATTGGAGCCCACTGGGGAGATCGTTTGGGGGAGTGTTTGATTTAGCAAACGCGCCACGTGGACCATTTAAGGTGAGGGTGCAATTCAGTGGGAGCCAGACTTGGGTGGAGTCGCCCAACAATGTCATTCCAGCTGACTGGAACGTTGGAGCTATTTATGACTCTGGAATTCATGCCTAA 744 0.5134 MGIYSKYQVVLACVLLLPALCLSQFTDSRATFYTTSDGSGTPTGACGFGDYGRTENSGRVAGVSDALWRGGSGCGACYQVRCKDTQLCSTEGVTIAATDMGSGDRTDFVMSLNGFLRLGVNSAASEQLRKNGTVDVQYRRVSCAFDGSNVKIKIHENSRFPDYLAIAVIYVPVSNDVVALQISNNNGGNWSPLGRSFGGVFDLANAPRGPFKVRVQFSGSQTWVESPNNVIPADWNVGAIYDSGIHA 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1864 247 SUPERFAMILY Barwin-like endoglucanases 12 147 IPR036908 -
Alju09g1864 247 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 243 IPR007117 -
Alju09g1864 247 SMART dpbb_1 60 138 IPR007112 -
Alju09g1864 247 Gene3D - 19 143 IPR036908 -
Alju09g1864 247 CDD DPBB_EXLB_N 26 143 - -
Alju09g1864 247 PANTHER EXPANSIN-B3 15 245 - -
Alju09g1864 247 Pfam Expansin C-terminal domain 150 232 IPR007117 -
Alju09g1864 247 Gene3D - 145 247 IPR036749 -
Alju09g1864 247 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Alju09g1864 247 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576
Alju09g1864 247 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Alju09g1864 247 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Alju09g1864 247 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Alju09g1864 247 PRINTS Expansin/Lol pI family signature 190 204 IPR007118 GO:0005576
Alju09g1864 247 Pfam Lytic transglycolase 62 138 IPR009009 -
Alju09g1864 247 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 148 IPR007112 -
Alju09g1864 247 SUPERFAMILY PHL pollen allergen 149 243 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1864 Alju-ChrAlju09 42423136 42424617 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1864 14 245 Expansin Gene Family AT4G17030 47.660 3.58e-72 219