Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1860 ATGGAGCTTCATTCTAAGTTCCAAGTAGTTCTTGTCTGCGTGATGCTGCTCTTCCCTGCGTTTTGCATCTCCCAAGATTTGATATCCTCCAGAGCCACCTATTATGGTAGCCCTGATAGCTATGGAAATCCAAGAGGAGCTTGTGGGTATGGCGATTATGGAAGGACTGTGAATGATGGGAGTGTTGCAGGCGTATCTGGACTCTGGAACAAAGGCTCTGGATGCGGTGCTTGCTACCAAGTAAGGTGTACGAATGCAGAATACTGTGATGAATACGGGTCGTTGGTGGTTGCAACAGACTATGGTGAAGGAGACAGAACAGACTTCGTAATGGGTCCACGTGCCTTCTCGAGAATGGGACGGAGTCCAGAAGCATCGGCGGAACTGTTGAAATACGGCGTCGTTGATGTGCAGTACACAAGAGTGTCATGCGTGTATGCCGGCGCCAACACGCTCATCAGAATCGACGAGAAAAGCAGATACCCAGACTACCTTGCTCTGGTCGTTCTCTACGTGCCTGGACAATTGGATGTGGCTTCCATTGAGATATTCCAGGTTGGTGGGAATCAATGGAGGGCGATGCGAAGAGCGTTTGGAGCAGTGTTTGACATAGTTGACGCGCCACGTCAACCGATTATTGTGAGGCTGCAGCTGATTGGGAGGGCAGGGCTTTATTCGGTAGAGTCCAAGAGTGCCATTCCCAGGGATTGGAAGATTGGAGCTTCTTATGACACCCAACTTCACATATAG 750 0.4987 MELHSKFQVVLVCVMLLFPAFCISQDLISSRATYYGSPDSYGNPRGACGYGDYGRTVNDGSVAGVSGLWNKGSGCGACYQVRCTNAEYCDEYGSLVVATDYGEGDRTDFVMGPRAFSRMGRSPEASAELLKYGVVDVQYTRVSCVYAGANTLIRIDEKSRYPDYLALVVLYVPGQLDVASIEIFQVGGNQWRAMRRAFGAVFDIVDAPRQPIIVRLQLIGRAGLYSVESKSAIPRDWKIGASYDTQLHI 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1860 249 Pfam Lytic transglycolase 62 139 IPR009009 -
Alju09g1860 249 SUPERFAMILY Barwin-like endoglucanases 13 148 IPR036908 -
Alju09g1860 249 Gene3D - 21 144 IPR036908 -
Alju09g1860 249 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Alju09g1860 249 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Alju09g1860 249 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Alju09g1860 249 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Alju09g1860 249 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Alju09g1860 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
Alju09g1860 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 163 245 IPR007117 -
Alju09g1860 249 PANTHER EXPANSIN-B3 15 247 - -
Alju09g1860 249 CDD DPBB_EXLB_N 28 144 - -
Alju09g1860 249 SUPERFAMILY PHL pollen allergen 152 244 IPR036749 -
Alju09g1860 249 Pfam Expansin C-terminal domain 154 234 IPR007117 -
Alju09g1860 249 Gene3D - 146 249 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1860 Alju-ChrAlju09 42367436 42368463 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1860 4 247 Expansin Gene Family AT4G17030 50.813 1.63e-88 261