Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1857 ATGGGAAAGCAAGGTCCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGCAATGGCCCGCCGGAGAAACCAGTTTTATGCAATGCCTGTGGTTCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACTCCATTACATGCTCGGACAGAAACTGATGATTGTGAGGATCAAAGGTTTTCAAGGGTAAAGAGCATATCGCTAAATAAGAACAAAGAAGTGAAATTGTCTAAACGAAAGCTGAATGAAGATAATTTATTTACTGGAGTGGCTGGCCTTGATTACAACCAAGGTTTTCGAAAGGCTACAGATGAAGATACAAGTAATAGATCAAGTTCAGGATCAGCTATCTCTAACTCAGAGAGTTGCGCTCAATTTGGTGGCACTGATGCCAGTGATTTGACAGGTCCTGCTCAGTCAATTGTCTGGGATGCCATGGTGCCTTCAAAGAAGAGGACATGTGTGGGTCGTCCAAAGCAATCTTCTGTTGAGAAGCTTACAAAAGATCTGTACACTATTCTTCATGAACAACAGTCTTATTTTTCAGCATCCTCTGAAGAGGATCTTCTTTTTGAAAGTGAAACACCAATGGTCTCTGTTGAGATAGGGCATGGAAGTGTTCTTATTAGGCACCCGAGCTCTATAGCTCGTGAAGAAGAGTCTGAGGCCAGCTCTCTTTCAGTTGATAACAAACAGTGCCCAACCAGTGAGACATATTCGTGTTCTGGTACCGCTTATGTGCATAATGGGTATGGCGGTGTGAATTTTCCATCTCCAGGGGTTCAAGAGATCAGGAGCTCTGCAGGCCAAGGAATGCTGCAAGAGCAACTTAAGAGGGACAAGAGTCAACATGATAAGGTTCAAATCCTTGGAAATAAATCGCCACTGTGCTCGGTAGATTTAAATGATGTCATTAACTATGATGAATTTATGAGGACCTTGACAAATGAAGAGCAGCAACAGTTACTGCAGTGTCTCACTGCTGTTGATACTACTAAACTTCCTGATAGCCTGAAAAGCATGTTCAGTAGCTCTCAATTCAAGGAGAACTTGAATTATTTTCAGCAGCTTCTTGCAGAAGGTGTCTTTGATATCTCCTTATCAGGGACAAAACCTGAAGACTGCAGGACTTTGAAAAGGCTAGCATTATCCAATCTGTCAAAATCAAAATGGGTGGAACATTATAACTTACTTAAGAAAAATAAGAACAGAGCTGGAAAATCTGTTGCTTTGGGTTCTTCTGGCACTGCATCTAGTAATGCTGCAAATGTCAAGAGATATCATGACAGCCAAAGTAAAAATTTATCAGAATTAAAGACAACGATGAGGAGTCCTAAAAGGGTGATGATGAAGGTTGGCTGTGAGGGCAAGGAAGCTGAAGAATATGGTTCTTGTTTCAGTCCAAAAAGCCTATTTACTTTGCCTTCTGATGGTGAGGCTGTCATGCTGGACTCTTTCAATTTTGTTGAGGAGAGTGGTGATCAGGAACTGCTGCTAGAAGTGCCATCAAACGGTTCTTTTCCCGAGGCAGAGCTTCTGCACCCAACTTTAAGCTTTGGTGTTCAAGCCAGCACCAGTAGTAGCTCAGTATACCCTCACATTCTCTATCCCTGA 1620 0.4247 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARTETDDCEDQRFSRVKSISLNKNKEVKLSKRKLNEDNLFTGVAGLDYNQGFRKATDEDTSNRSSSGSAISNSESCAQFGGTDASDLTGPAQSIVWDAMVPSKKRTCVGRPKQSSVEKLTKDLYTILHEQQSYFSASSEEDLLFESETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSVDNKQCPTSETYSCSGTAYVHNGYGGVNFPSPGVQEIRSSAGQGMLQEQLKRDKSQHDKVQILGNKSPLCSVDLNDVINYDEFMRTLTNEEQQQLLQCLTAVDTTKLPDSLKSMFSSSQFKENLNYFQQLLAEGVFDISLSGTKPEDCRTLKRLALSNLSKSKWVEHYNLLKKNKNRAGKSVALGSSGTASSNAANVKRYHDSQSKNLSELKTTMRSPKRVMMKVGCEGKEAEEYGSCFSPKSLFTLPSDGEAVMLDSFNFVEESGDQELLLEVPSNGSFPEAELLHPTLSFGVQASTSSSSVYPHILYP 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1857 539 Gene3D - 287 386 IPR038108 -
Alju09g1857 539 PANTHER OSJNBB0038F03.10 PROTEIN 1 533 IPR044589 -
Alju09g1857 539 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 294 406 IPR044867 -
Alju09g1857 539 FunFam GATA transcription factor 27 3 85 - -
Alju09g1857 539 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Alju09g1857 539 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Alju09g1857 539 MobiDBLite consensus disorder prediction 110 124 - -
Alju09g1857 539 MobiDBLite consensus disorder prediction 103 124 - -
Alju09g1857 539 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Alju09g1857 539 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Alju09g1857 539 Gene3D - 3 86 IPR013088 GO:0006355|GO:0008270
Alju09g1857 539 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Alju09g1857 539 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Alju09g1857 539 Pfam Asx homology domain 284 366 IPR028020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1857 Alju-ChrAlju09 42350751 42356468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1857 1 516 C2C2-Gata Transcription Factor Family AT4G17570 54.943 1.61e-169 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Alju09g1857 ASXH 1.4e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g1857 09 42350751 42356468 Alju12g0427 12 5178071 5183078 CCT