LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju09g1835	ATGATGGCCAATCAAGTTGAGGTTTCAGCTCTTGAACGCATAAAATTACATCTTCTAGGTGAACTCTCTCCGGCGGTAACGTCCGCTTGTGACGCCCTTTGGTTTGAGGAAGTGAACTCATCCATTTCAAGTTCTCAATCTCTCTGTTCCCAATCTTCAATTTCTGATGCTAATTCCATCATATCTGATTGCTTTCCTGGTATCCTCGATTTACCGGCCAATCCCGTACTTTCATCACAAGATCAAACAAATCCGTTTGAATTCAAGTCGAAACCCCAAATAATTGACCTCAAAACGCCAAATTCCCAAATCCAACCCTCGCAATTCGAAACTAGGTTTTCCAAACTCGAATCTAACACACTGGAACGCCCTCTGTCAAACAGTTGCGTCTTGGACTTCGATCCAAGACCTAATGAATCGCAGAAGAAATCTCCGTCGAGTAGGAAACCGTCGTTGCAAATCTCGCTTCCGAGGAAGACCGAGTGGATCCAGTTTGGGAATCCGGAGCAGCAAAAGGAGGTGGCAGAGATGGTGGAGCAGAAAAACCCGAAGGAAGTCGAGAAAAAGCACTACAGAGGAGTCCGACAGAGGCCGTGGGGCAAGTATGCGGCGGAGATCCGAGACCCGAACAAGCGCGGATCCAGGGTGTGGTTGGGAACATTCGACACAGCTATCGAAGCCGCCAAAGCCTACGATCGAGCTGCCTTTAAGCTTCGCGGCTCCAAAGCCATCCTAAACTTCCCTTTGGAAATTGAAACATCAAGATCGTTGGTTAGCTCCGGCGAGGGAAAACTCCGCCGTCAAGATGAAGAGGAGGTGGCGGAAGTGGAGGTAAAGCCGGTGGTGAAGAAGGCGAAAACGACGACGGAATCGGAGTCTCAGCAGAACTATACAAAGGACACTCCGTTAACGCCGTCTAATTGGAAGGGGTTCTGGGACAACGATTCAAACGGGATTTTCAGTGTCCCGCCGTTATCGCCGTTATCTCCTATCCCTGCCTTTGGTTGTCCCCAGCTTATGGTTGTGTGA	1029	0.4917	MMANQVEVSALERIKLHLLGELSPAVTSACDALWFEEVNSSISSSQSLCSQSSISDANSIISDCFPGILDLPANPVLSSQDQTNPFEFKSKPQIIDLKTPNSQIQPSQFETRFSKLESNTLERPLSNSCVLDFDPRPNESQKKSPSSRKPSLQISLPRKTEWIQFGNPEQQKEVAEMVEQKNPKEVEKKHYRGVRQRPWGKYAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFKLRGSKAILNFPLEIETSRSLVSSGEGKLRRQDEEEVAEVEVKPVVKKAKTTTESESQQNYTKDTPLTPSNWKGFWDNDSNGIFSVPPLSPLSPIPAFGCPQLMVV	342

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju09g1835	342	CDD	AP2	189	248	IPR001471	GO:0003700\|GO:0006355
	Alju09g1835	342	PRINTS	Ethylene responsive element binding protein signature	191	202	IPR001471	GO:0003700\|GO:0006355
	Alju09g1835	342	PRINTS	Ethylene responsive element binding protein signature	230	250	IPR001471	GO:0003700\|GO:0006355
	Alju09g1835	342	SUPERFAMILY	DNA-binding domain	190	250	IPR016177	GO:0003677
	Alju09g1835	342	PANTHER	DNA-BINDING DOMAIN	144	297	IPR044808	GO:0003700\|GO:0009873
	Alju09g1835	342	SMART	rav1_2	190	254	IPR001471	GO:0003700\|GO:0006355
	Alju09g1835	342	MobiDBLite	consensus disorder prediction	127	153	-	-
	Alju09g1835	342	FunFam	Ethylene-responsive transcription factor 2	189	250	-	-
	Alju09g1835	342	Gene3D	AP2/ERF domain	189	250	IPR036955	GO:0003700\|GO:0006355
	Alju09g1835	342	ProSiteProfiles	AP2/ERF domain profile.	190	248	IPR001471	GO:0003700\|GO:0006355
	Alju09g1835	342	Pfam	AP2 domain	190	240	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju09g1835	Alju-ChrAlju09	42177546	42178574	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju09g1835	2	342	AP2-EREBP Transcription Factor Family	AT5G47230	43.909	1.19e-66	210

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Alju09g1835		AP2	5.3e-16	CL0081