Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1826 ATGGTTGAAAAGGAGGATCTTGGTTTGAGTCTAAGCTTGAGCTTCCCTCACAATACTCCTCCTAATCCTCTCCACCTCAATCTCCTCCCTTCTTCTTCTTCCCATGCTGCCTCCAATAATCTTCACAAACCCTCTTGGAACGATGCCTTCACCTCCTCAGATCGAGATTCTGAAACATGCAGATGCGAAGGTCGATCCTTCCTGCGAGGAATCGACGTGAATCGGTTGCCTTCCGGCGGCGACTGCGAAGAGGAGGCCGGTGTTTCGTCTCCGAACAGCACGATCTCCAGCGTAAGTGGCAAGAGAAGTGAGAGAGAGGCTAACGGAGAAGACCACGATGCCGATAGAGACTGTTCTCGAGGAATCAGTGATGAAGAAGACGGCGAAACGTCCCGCAAAAAACTCAGGCTCTCAAAAGATCAATCCGCTATTCTCGAAGAAAGCTTCAAAGAGCACAATACCCTCAACCCCAAGCAAAAGATGGCACTTGCAAAGCAGCTAGGCCTTCGACCAAGACAAGTAGAGGTCTGGTTTCAGAACAGAAGAGCAAGGACTAAGCTGAAGCAAACAGAGGTAGACTGTGAGTTCTTGAAGAGATGCTGCGAGAATCTAACGGAAGAGAACAGGCGGTTGCAGAAGGAAGTTCAGGAGCTTAGAGCTCTGAAACTTTCCCCACAACTGTACATGCGAATGACCCCACCCACAACCCTCACCATGTGCCCCTCATGTGAGCGAGTTGCCGTGCCGCCCTATACCGCCGTTGGGGGCAACCGACACCACCCAATGGCCCAGTCTCACGCCCGGCCCATCCCAGTCGGCCCTTGGGCCGCTGCAGCCGCTCCCATAGCCCACCGGGCCTTCGATGTCCTCCACCATAGGTCGTGA 885 0.5333 MVEKEDLGLSLSLSFPHNTPPNPLHLNLLPSSSSHAASNNLHKPSWNDAFTSSDRDSETCRCEGRSFLRGIDVNRLPSGGDCEEEAGVSSPNSTISSVSGKRSEREANGEDHDADRDCSRGISDEEDGETSRKKLRLSKDQSAILEESFKEHNTLNPKQKMALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQLYMRMTPPTTLTMCPSCERVAVPPYTAVGGNRHHPMAQSHARPIPVGPWAAAAAPIAHRAFDVLHHRS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1826 294 MobiDBLite consensus disorder prediction 103 135 - -
Alju09g1826 294 MobiDBLite consensus disorder prediction 87 102 - -
Alju09g1826 294 Pfam Homeodomain 132 186 IPR001356 GO:0003677
Alju09g1826 294 SMART halz 188 231 IPR003106 GO:0006355|GO:0043565
Alju09g1826 294 PRINTS Lambda-repressor HTH signature 168 184 IPR000047 GO:0003677
Alju09g1826 294 PRINTS Lambda-repressor HTH signature 159 168 IPR000047 GO:0003677
Alju09g1826 294 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 8 252 - -
Alju09g1826 294 MobiDBLite consensus disorder prediction 34 53 - -
Alju09g1826 294 SUPERFAMILY Homeodomain-like 121 189 IPR009057 -
Alju09g1826 294 Coils Coil 187 224 - -
Alju09g1826 294 Gene3D - 136 186 - -
Alju09g1826 294 MobiDBLite consensus disorder prediction 34 57 - -
Alju09g1826 294 FunFam Homeobox-leucine zipper protein 18 116 193 - -
Alju09g1826 294 ProSitePatterns 'Homeobox' domain signature. 163 186 IPR017970 GO:0000981|GO:0006355
Alju09g1826 294 ProSiteProfiles 'Homeobox' domain profile. 128 188 IPR001356 GO:0003677
Alju09g1826 294 CDD homeodomain 132 189 IPR001356 GO:0003677
Alju09g1826 294 MobiDBLite consensus disorder prediction 73 135 - -
Alju09g1826 294 Pfam HD-ZIP protein N terminus 1 106 IPR006712 GO:0005634
Alju09g1826 294 Pfam Homeobox associated leucine zipper 188 222 IPR003106 GO:0006355|GO:0043565
Alju09g1826 294 SMART HOX_1 130 192 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1826 Alju-ChrAlju09 42104682 42106085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1826 1 294 Homeobox Transcription Factor Family AT5G47370 61.688 1.08e-114 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Alju09g1826 HD-ZIP_N 4.3e-36 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g1826 09 42104682 42106085 Alju12g0450 12 5554449 5555573 CCT