LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju09g1762	ATGGGGAGACAACCTTGCTGTGACAAACTGGGCGTGAAGAAAGGACCATGGACTGCTGAGGAAGATAAGAAGCTTATCAACTTCATTCTCACCAATGGCCAGTGCTGTTGGCGGGCCGTTCCCAAGCTCGCCGGCCTCCGTCGTTGCGGTAAGAGTTGCCGCCTTCGCTGGACTAATTATCTCCGCCCCGACTTGAAGAGAGGACTTCTCACTGAATCTGAAGAGCAGCTTGTTATCGATCTCCATGCCCGTCTTGGCAACAGGTGGTCCAAGATTGCTGCCAGATTACCTGGAAGGACAGACAATGAGATTAAGAATCACTGGAACACCCACATCAAGAAAAAGCTGCTTAAGATGGGTATTGACCCTGTTACTCATGAACCTCTTAATAAACAGGCTGCCTCCCAGGAAATAACAACTTCTTCCCATCAGAATAATCCACAATCTGCAAATAATCATCAGCTCAAGGAAAGCGAGAGGGTTCCGAATTCTGAGGATAATTCGAGCACGTCCCCTGTTGAAAACTCCTCTTCTGGGGACGAGTCCCTTCTGCTAGACAGTATCTGCAGCGACGACTCTCTAATGAACAGCTTGTGGCAGGACGAAACACCACTGATGGATGCATTATGGGACAGTGAACCTAAAGTGCAGAATCCTACTACTAATAATAATGACATGGCCATGCCATCTTGGGAGGACAACTGTGCTTGGTTCTTGGACTGTCAGGACTTTGGTATTCATGATTTTGGTTTTAATTGTTTTAACGAGTTTGAGTCAAATTCACTGCAAACTTTAGGAATGGAGGAAAAGGATCATTAG	819	0.4664	MGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTESEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLNKQAASQEITTSSHQNNPQSANNHQLKESERVPNSEDNSSTSPVENSSSGDESLLLDSICSDDSLMNSLWQDETPLMDALWDSEPKVQNPTTNNNDMAMPSWEDNCAWFLDCQDFGIHDFGFNCFNEFESNSLQTLGMEEKDH	272

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju09g1762	272	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Alju09g1762	272	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Alju09g1762	272	Gene3D	-	70	161	-	-
	Alju09g1762	272	CDD	SANT	16	61	IPR001005	-
	Alju09g1762	272	Gene3D	-	12	67	-	-
	Alju09g1762	272	PANTHER	F14D16.11-RELATED	1	183	-	-
	Alju09g1762	272	Pfam	Myb-like DNA-binding domain	71	111	IPR001005	-
	Alju09g1762	272	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Alju09g1762	272	MobiDBLite	consensus disorder prediction	164	182	-	-
	Alju09g1762	272	FunFam	MYB transcription factor	11	67	-	-
	Alju09g1762	272	FunFam	MYB transcription factor	70	148	-	-
	Alju09g1762	272	SUPERFAMILY	Homeodomain-like	11	108	IPR009057	-
	Alju09g1762	272	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	61	IPR017930	-
	Alju09g1762	272	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	62	116	IPR017930	-
	Alju09g1762	272	SMART	sant	66	114	IPR001005	-
	Alju09g1762	272	SMART	sant	13	63	IPR001005	-
	Alju09g1762	272	CDD	SANT	71	112	IPR001005	-
	Alju09g1762	272	MobiDBLite	consensus disorder prediction	131	182	-	-
	Alju09g1762	272	MobiDBLite	consensus disorder prediction	131	157	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju09g1762	Alju-ChrAlju09	41471887	41473194	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju09g1762	1	264	MYB Transcription Factor Family	AT4G12350	58.511	2.18e-104	303

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Alju09g1762		Myb_DNA-binding	2.8e-13	CL0123