Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1702 ATGGTGAGAGGAAAAACTGAGATGAAACGCATAGAAAACGACACGAGCAGGCAAGTGACGTTCTCGAAGAGGAGGAACGGGCTGCTTAAGAAGGCTTTCGAGCTGTCTGTACTATGTGATGCTGAAGTTGCACTCATTATCTTCTCGCCCAGAGGCAGGCTTTCTGAGTTCTCCAGTTCTAGTGTGAATAAAACGGTTGAACGGTATCTAAGGAAAGTCAAGGACCGGGGTCTTGGCACCAAAGGAAGCCAAGCAAATACGCAGGAAGGTACTATTAACATGACTAAGAAGATAGAGCATCTTGAAGTTCTTAAAAGGAAGTTTCTGGGAGATGGTTTGGATGCGTGCTCTATTGACGAGTTACGTCAGATAGAGAACCAGCTGGAACAAAGTTTGACCAAAATTAGGGCCAGAAAGAATCAACTGTTCAAGGAGCAGATCGGGGAGCTAAGAGAAGAGGAAAAGCGCTTACTGGAAATAAATAAAGATTTACGGGAGCAGTTGTCACGGTGTGGCGGCGATGAACTTCAGCGGCGGAATTCGGATGATGAAGAGCAGGATGATGAGAACTTGAACGAAGGAGCGGATGGCGTAGAGACAGAATTGGTGATAGGACCACCTGCAGAGAGACGAATAATGCCTTGA 645 0.4636 MVRGKTEMKRIENDTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGRLSEFSSSSVNKTVERYLRKVKDRGLGTKGSQANTQEGTINMTKKIEHLEVLKRKFLGDGLDACSIDELRQIENQLEQSLTKIRARKNQLFKEQIGELREEEKRLLEINKDLREQLSRCGGDELQRRNSDDEEQDDENLNEGADGVETELVIGPPAERRIMP 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1702 214 Pfam K-box region 84 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju09g1702 214 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Alju09g1702 214 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju09g1702 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Alju09g1702 214 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Alju09g1702 214 CDD MADS_MEF2_like 3 70 IPR033896 GO:0000977|GO:0045944
Alju09g1702 214 FunFam Agamous-like MADS-box protein AGL13 13 79 - -
Alju09g1702 214 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 176 - -
Alju09g1702 214 MobiDBLite consensus disorder prediction 171 214 - -
Alju09g1702 214 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju09g1702 214 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju09g1702 214 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju09g1702 214 Coils Coil 118 145 - -
Alju09g1702 214 Coils Coil 147 170 - -
Alju09g1702 214 MobiDBLite consensus disorder prediction 171 185 - -
Alju09g1702 214 Gene3D - 13 104 IPR036879 GO:0003677|GO:0046983
Alju09g1702 214 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju09g1702 214 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1702 Alju-ChrAlju09 40899778 40904940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1702 1 211 MADS-box Gene Family AT4G22950 57.143 2.39e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju09g1702 K-box 2.9e-23 No_clan