LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju09g1687	ATGAACGCTTTCTCAACTTTCATAACTACCTCAGAGGGGTCCAACTCCAACTCATCATCGCACTCCGACGAAGAAGCCTCCATCACATTAGCGTCGGAGAAACCCAAGAAACGAACCGGACGCAGGGTGTTTAAGGAGACAAGACATCCTGTGTACCGAGGAGTGCGTCGCAGGGACAACGACAAGTGGGTCTGCGAGGTTCGTGTTCCTAACAACAACAAACTAAGGATCTGGCTTGGGACTCATTCGACACCTGAGAAAGCTGCCAGGGCCCATGATGTTGCTGCTCTCGCACTTCGAGGCAAGTCGGCTTGTCTCAATTTCGCTGACTCCGCATGGCGGCTCCCCGTGCCAGCGTCCACCGATCCCGACGAGATACGGCGAGTGGCGATGGAGGCTGTGGAGGCATTTGATGACGTGGACGAAGTGTGTAGCAGTATGGGGACGACAATGAGATCTTCAGAAGAAGAAGCTAATAACAATAAGGGTAGTATGAGTATGGAGTTAGAAAGGTGCGTGAATAATGAGGTTTTGTTTAGCATGGCGGATGAGCCGTTGAGATCTCCCCTGGCGGCTTATTGTTCTCTGGGAACACACGGATGGGGGTGGAGAGACGAAGTGGACCCGGTGGATAGTGAGGTGTCACTTTGGAGCTTTACCATTTAG	666	0.5225	MNAFSTFITTSEGSNSNSSSHSDEEASITLASEKPKKRTGRRVFKETRHPVYRGVRRRDNDKWVCEVRVPNNNKLRIWLGTHSTPEKAARAHDVAALALRGKSACLNFADSAWRLPVPASTDPDEIRRVAMEAVEAFDDVDEVCSSMGTTMRSSEEEANNNKGSMSMELERCVNNEVLFSMADEPLRSPLAAYCSLGTHGWGWRDEVDPVDSEVSLWSFTI	221

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju09g1687	221	SUPERFAMILY	DNA-binding domain	51	111	IPR016177	GO:0003677
	Alju09g1687	221	MobiDBLite	consensus disorder prediction	1	26	-	-
	Alju09g1687	221	MobiDBLite	consensus disorder prediction	27	41	-	-
	Alju09g1687	221	CDD	AP2	52	111	IPR001471	GO:0003700\|GO:0006355
	Alju09g1687	221	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D	10	218	IPR045277	GO:0003700
	Alju09g1687	221	PRINTS	Ethylene responsive element binding protein signature	75	91	IPR001471	GO:0003700\|GO:0006355
	Alju09g1687	221	PRINTS	Ethylene responsive element binding protein signature	52	63	IPR001471	GO:0003700\|GO:0006355
	Alju09g1687	221	ProSiteProfiles	AP2/ERF domain profile.	51	109	IPR001471	GO:0003700\|GO:0006355
	Alju09g1687	221	MobiDBLite	consensus disorder prediction	1	41	-	-
	Alju09g1687	221	Pfam	AP2 domain	50	101	IPR001471	GO:0003700\|GO:0006355
	Alju09g1687	221	Gene3D	AP2/ERF domain	51	110	IPR036955	GO:0003700\|GO:0006355
	Alju09g1687	221	SMART	rav1_2	51	115	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju09g1687	Alju-ChrAlju09	40712898	40713563	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju09g1687	24	219	AP2-EREBP Transcription Factor Family	AT1G63030	52.239	1.53e-61	189

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Alju09g1687		AP2	1e-12	CL0081