Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1666 ATGGCGACGACTAGGTCACGGAATCCTTCCTCCGACGACATAGTCGATTCGACGCCGTTCATAGCAACTTCAGGCGGGTCTTCCGATGAATTGAATTCTGGCCGTCGCTTTGTTCGCAGGCAGAGCCTACGCCAAGCGGCTCGGTTCCTGAGGCAGGCCAGTGGCCGGAGGATGATGCGCGAGCCATCGATGCTAGTCAGAGAGACTGCAGCCGAGCAATTGGAGGAGAGACAGGGAGATTGGGCTTATTCTAAACCCGTTGTGATCCTTGATATTATCTGGAACTTCGTCTTTGTTGTCGGGGCTGCTACAATTTTAATTTTGAGTCGAAGCGAGTCGCCGACCATGCCTTTGAGGTTGTGGATTGCGGGCTACGCTCTGCAATGCATCCTTCACGTGTTCTGCGTCTGCGTTGAATATAGGAGGCGGAGGAGGCTCCGGCGGCCCCAGTATCCGCCATCCTTGGACGCAGTGCACGGAAGGACAGGCAGCGGTGAGAATATGAGTCTGGGTTCAAGGGATGGTTCTGGGCATTATGTGACATTGGCGCAATTCAACGAAGAGGGTTCAAGTGTGGCGAAGCATTTGGAGTCAGCAAACACAATGTTTTCATTTATCTGGTGGATCATTGGATTTTACTGGGTATCAGCTGGTGGTCAATCTTTAGTCCTTGATTCTCCATTATTATACTGGTTATGCATAGCTTTCCTGGGTTTTGATGTTTTCTTTGTTGTATTCTGTGTTGCTCTGGCATTCATCATTGGTATTGCTGTATGCTGTTGTCTTCCATGTATTATTGCACTTCTATATGCTGTTGCAGACCAGGAAGGAGCATCAAAAGAAGACATTGAGCAGTTGGCTAAGTTCAAATTCAGAAGAATTGACAATGATGAGAAACTTGCTGGTAATGCACAAGAACCAGTTGGTGGAATAATGACTGAATGCGGCACTGATTCACCGAGTGAACACATTCTTTCTGAGGAGGATGCGGAATGCTGCATCTGTCTATCTGCTTATGATGATGGTGTTGACCTTAGAGAACTTCCTTGTGGCCACCATTTTCACTGTGCCTGTGTAGACAAATGGCTCCACATTAATGCTACTTGTCCTCTCTGCAAGTATAACATCTTGAAGAGAATCAACCAAGAGGAAGCGTAG 1158 0.4784 MATTRSRNPSSDDIVDSTPFIATSGGSSDELNSGRRFVRRQSLRQAARFLRQASGRRMMREPSMLVRETAAEQLEERQGDWAYSKPVVILDIIWNFVFVVGAATILILSRSESPTMPLRLWIAGYALQCILHVFCVCVEYRRRRRLRRPQYPPSLDAVHGRTGSGENMSLGSRDGSGHYVTLAQFNEEGSSVAKHLESANTMFSFIWWIIGFYWVSAGGQSLVLDSPLLYWLCIAFLGFDVFFVVFCVALAFIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLAKFKFRRIDNDEKLAGNAQEPVGGIMTECGTDSPSEHILSEEDAECCICLSAYDDGVDLRELPCGHHFHCACVDKWLHINATCPLCKYNILKRINQEEA 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1666 385 SMART ring_2 332 372 IPR001841 -
Alju09g1666 385 FunFam E3 ubiquitin-protein ligase At1g12760 318 383 - -
Alju09g1666 385 SUPERFAMILY RING/U-box 323 379 - -
Alju09g1666 385 MobiDBLite consensus disorder prediction 1 31 - -
Alju09g1666 385 Pfam Ring finger domain 331 373 IPR001841 -
Alju09g1666 385 ProSiteProfiles Zinc finger RING-type profile. 332 373 IPR001841 -
Alju09g1666 385 MobiDBLite consensus disorder prediction 1 32 - -
Alju09g1666 385 CDD RING-H2_RNF6-like 331 373 - -
Alju09g1666 385 PANTHER TARGET OF ERK KINASE MPK-1 53 377 - -
Alju09g1666 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 382 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1666 Alju-ChrAlju09 40470712 40473925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1666 24 383 C3H Transcription Factor Family AT1G68070 48.343 2.63e-115 338