Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1664 ATGGCGCCATCGCCGGTGGAGCAGACCGGCGAATCAGCAGCGACTGACTCTCAGAGATCTATTCCGACGCCGTTTCTGACGAAAACGTACCAGCTTGTGGATGACCCCTCTGTGGATGACCTGCTTTCCTGGAATGAAGATGGAACCAGTTTCATAGTTTGGCGACCCGCCGAATTCGCTCGCGATTTGCTTCCAAAGTATTTCAAACACAACAATTTTTCCAGTTTCGTCCGTCAACTAAATACTTATGGATTTCGGAAGGTTGTCCCTGATCGGTGGGAATTCGCGAATGATTGTTTCCGGCGAGGCGAGAGAAGCCTGCTCCGGGACATTCAACGGCGGAAAATATCACCGTCTGCGGCTGCCGGCGGTGCGGCCAATGCAGTGACGGTGGCTGCAGTACCTGCCGCTGCCTTAGGGGTGTCTCCGACAAACTCCGGTGAGGAACAGGTAATCTCTTCAAACACATCTCCGGTTGCCGGGAATAATACAGTGCAGCGCACCACAAGTTTCACCACTGCACCCGAGCTCTTAGAAGAGAATAAAAAGCTTAGGAAAGAGAATATGGAATTGAGTAATGAATTGAGTCAATTGAAGGGCCTCTGTAATAACATACTGACATTGATGACGAATTATGCTTCAAGCCAATTAGAGTCCAGTAGTGCCGCCGACGGAAAACCACAGGACCTTTTAACTGCGGCGCAGCTTTCGGGTGAGGAAGCCATCGTAGGCGGCGGCGCTCCGCAAGAGATGAAAGTTGCAGAGGAGGAGGTGCCCAAATTGTTTGGGGTTTCAATTGGGGCAAAACGACGTCGGGGTTCAGAGGGTGAGGAGGCAGAGAAAGAAGAACAAAATCAAACACAGTCGTCCCAGGAACCCGATGGTGGCTCCGATGTGAAAACAGAGCCGCTAGATGGTAGTAACTCCGATGATCAGGAGACACCCTGGTTGGAACTTGGGAAACAATAG 969 0.5129 MAPSPVEQTGESAATDSQRSIPTPFLTKTYQLVDDPSVDDLLSWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGERSLLRDIQRRKISPSAAAGGAANAVTVAAVPAAALGVSPTNSGEEQVISSNTSPVAGNNTVQRTTSFTTAPELLEENKKLRKENMELSNELSQLKGLCNNILTLMTNYASSQLESSSAADGKPQDLLTAAQLSGEEAIVGGGAPQEMKVAEEEVPKLFGVSIGAKRRRGSEGEEAEKEEQNQTQSSQEPDGGSDVKTEPLDGSNSDDQETPWLELGKQ 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1664 322 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju09g1664 322 MobiDBLite consensus disorder prediction 1 20 - -
Alju09g1664 322 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju09g1664 322 Coils Coil 174 201 - -
Alju09g1664 322 MobiDBLite consensus disorder prediction 142 169 - -
Alju09g1664 322 MobiDBLite consensus disorder prediction 270 287 - -
Alju09g1664 322 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju09g1664 322 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 16 290 IPR027725 -
Alju09g1664 322 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju09g1664 322 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju09g1664 322 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju09g1664 322 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Alju09g1664 322 FunFam Heat stress transcription factor B-4 17 115 - -
Alju09g1664 322 Gene3D - 17 115 IPR036388 -
Alju09g1664 322 MobiDBLite consensus disorder prediction 259 322 - -
Alju09g1664 322 MobiDBLite consensus disorder prediction 143 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1664 Alju-ChrAlju09 40448021 40449092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1664 16 321 HSF AT4G11660 55.287 1.29e-106 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Alju09g1664 HSF_DNA-bind 7.5e-32 CL0123