Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1586 ATGGGTCACCACTCATGCTGCAATCAACAGAAGGTAAAGAGAGGGCTTTGGTCTCCTGAGGAAGACGAGAAACTCATCAGATACATTACCACTCATGGCTATGGCTGTTGGAGTGAGGTCCCCGAGAAAGCTGGGCTGCAACGGTGCGGTAAGAGTTGTCGCCTGAGGTGGATTAATTATTTGAGACCTGATATTAGAAGAGGCAGGTTTACTCCTGAAGAAGAGAAGTTAATTATAAGCCTTCATGGGGTCGTAGGCAACAGGTGGGCTCACATTGCAAGCCACTTGCCTGGAAGAACAGACAACGAGATAAAGAACTATTGGAATTCATGGATCAAAAAGAAAATAAGAAAGCCTTCTTCAGTTTCTTCAACCACAAATAATGCACAAAGCAGCATCATCGATCACCACCCATATAACTTCAATAACTCCAATCAATTAGACTTCACAAACCAAGATAATCTAACCACAAAACCACCACCAATCCATCATCACCAAGACACTACCACTTCTCTATTTTCTTCCACATGCCCCTTATTTATGTTTGACACTAGCTCTTTAGATGCTTCTTCTGCAACAGCAACCACCACAATACTGGAAAACAACAACAATAATGCAAGATTACCAGAAATGTTAATCCACCATCATCATCAGCAAGATGCTACTATGGGTTTAAGCTCAGAAACATGGAATAATCTCAGCCACCACCATCAGATTCAAGCTTTTCCTCCTCCTCCTCCTCCATCGTCGGCTTCTTTCACCGCAGCGGCTTCAGGCATGGTGGCTTCTAATTATCTGCCACCGTTGATAGAGAATGTGGACAACATGGTGCCGAATATTCATGACGTGCAATCTTGCAGTATAGTGGATGAGGAAGGTGAAATGGCACTAGAGTGCTTGCAGAGGCATGAGTTGAACGAGTGGGTGCTGGACAATTCAGTACAGCAACAATGTCCCAGCTTTATTTTTTGGGAAAATGTGGAAGGACGACTTGGAGGCGGCGGTGACGGCGGCGAAGAAATTGCACCGAATTCTTCGAATTTGGAAACTACGCTTTCTTCTTTTCCTTCCTCCTTATGA 1080 0.4426 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSSVSSTTNNAQSSIIDHHPYNFNNSNQLDFTNQDNLTTKPPPIHHHQDTTTSLFSSTCPLFMFDTSSLDASSATATTTILENNNNNARLPEMLIHHHHQQDATMGLSSETWNNLSHHHQIQAFPPPPPPSSASFTAAASGMVASNYLPPLIENVDNMVPNIHDVQSCSIVDEEGEMALECLQRHELNEWVLDNSVQQQCPSFIFWENVEGRLGGGGDGGEEIAPNSSNLETTLSSFPSSL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1586 359 FunFam Transcription factor MYB26 68 138 - -
Alju09g1586 359 CDD SANT 69 112 IPR001005 -
Alju09g1586 359 FunFam MYB transcription factor 6 66 - -
Alju09g1586 359 MobiDBLite consensus disorder prediction 343 359 - -
Alju09g1586 359 MobiDBLite consensus disorder prediction 334 359 - -
Alju09g1586 359 CDD SANT 17 61 IPR001005 -
Alju09g1586 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Alju09g1586 359 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Alju09g1586 359 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Alju09g1586 359 SMART sant 66 114 IPR001005 -
Alju09g1586 359 SMART sant 13 63 IPR001005 -
Alju09g1586 359 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Alju09g1586 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Alju09g1586 359 PANTHER MYB DOMAIN PROTEIN 55 1 254 - -
Alju09g1586 359 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Alju09g1586 359 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Alju09g1586 359 Gene3D - 69 136 - -
Alju09g1586 359 Gene3D - 6 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1586 Alju-ChrAlju09 39835767 39837699 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1586 1 340 MYB Transcription Factor Family AT1G63910 50.270 4.53e-101 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju09g1586 Myb_DNA-binding 5.7e-15 CL0123