Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1540 ATGACTGCGCATTCTATCAGATACACTCACCACACTAAACTCGTCTCGCCGGAGGAGCAACGCCGTCTGTGTGGAGGAATGGAGTATCCCAGAGTTGTTAGAATATGCGTGACAGACGGCGATGCGACGGATTCATCCAGCGACGAAGAAAGAGGGGCTGTCACGCGCCACCGTGGGAGGAGGTTCGTCAACGAGATTACGATAACCCAAAACGATGTTGCTGCTAATAGTCCTGAGAGCAAGCGTCGGAAGAGTGATAGGAGTAGAGGAATGGGAGGTCGGCGGGCGATGAAGGCGGCGTCGGCGGGGAAGAAGTTCAGGGGAGTGAGACAGAGGCCGTGGGGGAAATGGGCGGCGGAGATCAGAGATCCTCTGCGACGTGTACGGTTGTGGCTGGGGACGTACGAAACTGCGGAGGAAGCTGCGATGGTGTACGATAAAGCAGCGATTGAGCTGAGAGGAGCAGAGGCACTGACCAATTTCATAACTCCACCGGGAAAGGAGTGCGAGGAGGAGAAGAAATTGAGTTCCCCGAAATCTGTTCTTCAGTCTCAGAGTGGAAATCTGTCAGAGGAGGTTGAATCTGTAACAACCAAAGGTGATACGATCAGTGAATGTCGGGACGAGTCACCGTCGTCCTCGTCAGCGTCAGGGTTATTGGAGAACTTATCAGAGTTTCCGGCTGATATATTCGACTTCCAGATATCGTTGCCGGACCTATTTGACGGGACGAATATTACAGAAAGCATCTACTCCGATGTGGCGTGGGTGAGTCCCACCGAAAACTTCGGCCTGAGTTTCGATTTCGAATCGGGTTTCGGATTCTCGAATTGGCACAGAGATGACTATTTCCAAGATATCGGCGATTTGTTTGTTACAGATCCACTTGTTGCTCTTTGA 900 0.5189 MTAHSIRYTHHTKLVSPEEQRRLCGGMEYPRVVRICVTDGDATDSSSDEERGAVTRHRGRRFVNEITITQNDVAANSPESKRRKSDRSRGMGGRRAMKAASAGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYETAEEAAMVYDKAAIELRGAEALTNFITPPGKECEEEKKLSSPKSVLQSQSGNLSEEVESVTTKGDTISECRDESPSSSSASGLLENLSEFPADIFDFQISLPDLFDGTNITESIYSDVAWVSPTENFGLSFDFESGFGFSNWHRDDYFQDIGDLFVTDPLVAL 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1540 299 MobiDBLite consensus disorder prediction 77 93 - -
Alju09g1540 299 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 30 194 - -
Alju09g1540 299 SMART rav1_2 105 168 IPR001471 GO:0003700|GO:0006355
Alju09g1540 299 MobiDBLite consensus disorder prediction 72 105 - -
Alju09g1540 299 CDD AP2 104 161 IPR001471 GO:0003700|GO:0006355
Alju09g1540 299 MobiDBLite consensus disorder prediction 178 200 - -
Alju09g1540 299 ProSiteProfiles AP2/ERF domain profile. 105 162 IPR001471 GO:0003700|GO:0006355
Alju09g1540 299 SUPERFAMILY DNA-binding domain 105 161 IPR016177 GO:0003677
Alju09g1540 299 MobiDBLite consensus disorder prediction 169 218 - -
Alju09g1540 299 Pfam AP2 domain 105 154 IPR001471 GO:0003700|GO:0006355
Alju09g1540 299 Gene3D AP2/ERF domain 104 163 IPR036955 GO:0003700|GO:0006355
Alju09g1540 299 FunFam Ethylene-responsive transcription factor 2 104 163 - -
Alju09g1540 299 PRINTS Ethylene responsive element binding protein signature 128 144 IPR001471 GO:0003700|GO:0006355
Alju09g1540 299 PRINTS Ethylene responsive element binding protein signature 106 117 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1540 Alju-ChrAlju09 39318439 39319338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1540 1 299 AP2-EREBP Transcription Factor Family AT4G23750 39.889 1.74e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju09g1540 AP2 4.8e-13 CL0081