Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1533 ATGGCTGAGATCAGTGCCGATGTGTCCTTCGATCAAGTCCCGTCGAGGAAGCAGCGAAGCCGAAGAGCGTTGAAGGACAAAAATTCCTCAACCAACGATGTCAAATCCTTGCCCAAGAAGCTGCCCGAGTCACCACCGGTTTCTACGGGATCAGACGCCCCAAAGGAGAACCAATCGAGCGTCTCTGAATCTCAACCACGATCTTCACCCAAGAAGGGAAAAGCTGCCTCCAAGAAACAGTCGAAGCAATCTTTTGATAAAGATTTGCAAGAAATGCAGCAGATGCTGCAAAAATTGCGCCTCGATAAGGAGAAAACTGAAGAGCTCTTGAAGGTCAAAGATGAGATGTTGAAGCAGAAGGAAGAGGAGCTCGACGAGCGTGGCCGCGAGCAGGAGAAGCTTCAGATGGAGTTGAAAAAATTGCAGAAGATCAAGGAATTCAAACCCACCATGAATTTGCCTAGGCTGAGAGAAAAGGAGGAAGAAAAGGACAAGAAGAAGAAGAATGGATGTGCCGTGAAAAGGCCTTCTCCACCTTACATTTTGTGGAGCAAAGATCAATGGGCTGAGATTAAGAAAGCGAATCCAGAGGCAGAATTCAAGGATATTTCAAACTTGTTAGGGGCTAAATGGAAGACTATCAGTGAACAAGAGAAACAGCCTTATGAGGAGAAATATCTTGTCGAGAAAGAAGCGTATCTGCGGATAATCACTAAGGAGAGACGTGAAATTGAGGCGATGAAGCTCTTGGAAGAGGAGCAAAAGCAGAAGACTGCCATGGAATTGCTCGAACAGTATATGCTCTTCAAACAAGAAACAGAGAAAGAAAGCAAGAAGAACAGAAAAGAGAAGGATCCACTGAAACCAAAACATCCTGTGTCAGCTTTTATCTTGTACACGAATGATAGGCGGGCAGCTATTCTTGCAGAGAACAAGAGTATCTTGGAGGTTTCAAAGATTACTGGTGAGGAGTGGAAAAACATGACAGAAGATCAGAAGAAACCTTATGAAGAGATGGCAAAGAAGAATAAGGAGAAATATCTTCAAGAAATGGAGGCTTACAAACAGAAGAAGGATGAGGAGGCTGCGAATGTCAGGAAGGAAGAGGAGGAGCAAATGAAACTTCAGAAAGAAGAAGCCTTGAAACTGCTGAAGAAGAAGGAGAAAACAGAGAATCTGATCAAGAAGTCAAAGAAGAAGAAACAGAGCAAGGAAGACAAGAATTGCGATCCTAACAGGCCAAAGAGACCAGCATCTTCATATCTGCTATTCAGCAAAGAAGCAAGGAAGAGCATACAGGAGGAACGACCAGAGATCAATAACTCGACACTGAACTCACTCATATCAGTGAAATGGAAGGAACTGAAGGAGGAAGAGAGAAAATTTTGGAACGACAAAGCTGCAGAGGCAATGGAGGCATACAAGAAGGAATTGGAGGAGTACAACAAATCGATGGCAGCTAAATTGGACCAGAAAACACAAGAATGA 1488 0.4388 MAEISADVSFDQVPSRKQRSRRALKDKNSSTNDVKSLPKKLPESPPVSTGSDAPKENQSSVSESQPRSSPKKGKAASKKQSKQSFDKDLQEMQQMLQKLRLDKEKTEELLKVKDEMLKQKEEELDERGREQEKLQMELKKLQKIKEFKPTMNLPRLREKEEEKDKKKKNGCAVKRPSPPYILWSKDQWAEIKKANPEAEFKDISNLLGAKWKTISEQEKQPYEEKYLVEKEAYLRIITKERREIEAMKLLEEEQKQKTAMELLEQYMLFKQETEKESKKNRKEKDPLKPKHPVSAFILYTNDRRAAILAENKSILEVSKITGEEWKNMTEDQKKPYEEMAKKNKEKYLQEMEAYKQKKDEEAANVRKEEEEQMKLQKEEALKLLKKKEKTENLIKKSKKKKQSKEDKNCDPNRPKRPASSYLLFSKEARKSIQEERPEINNSTLNSLISVKWKELKEEERKFWNDKAAEAMEAYKKELEEYNKSMAAKLDQKTQE 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1533 495 MobiDBLite consensus disorder prediction 1 101 - -
Alju09g1533 495 SUPERFAMILY HMG-box 276 361 IPR036910 -
Alju09g1533 495 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 414 482 IPR009071 -
Alju09g1533 495 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 289 355 IPR009071 -
Alju09g1533 495 MobiDBLite consensus disorder prediction 389 423 - -
Alju09g1533 495 SMART hmgende2 413 483 IPR009071 -
Alju09g1533 495 SMART hmgende2 288 356 IPR009071 -
Alju09g1533 495 SMART hmgende2 172 242 IPR009071 -
Alju09g1533 495 MobiDBLite consensus disorder prediction 50 71 - -
Alju09g1533 495 MobiDBLite consensus disorder prediction 14 33 - -
Alju09g1533 495 CDD HMG-box_AtHMGB6-like_rpt1 174 241 - -
Alju09g1533 495 MobiDBLite consensus disorder prediction 149 171 - -
Alju09g1533 495 Pfam HMG (high mobility group) box 289 355 IPR009071 -
Alju09g1533 495 Pfam HMG (high mobility group) box 414 482 IPR009071 -
Alju09g1533 495 Pfam HMG (high mobility group) box 173 235 IPR009071 -
Alju09g1533 495 Coils Coil 453 495 - -
Alju09g1533 495 SUPERFAMILY HMG-box 410 485 IPR036910 -
Alju09g1533 495 MobiDBLite consensus disorder prediction 353 374 - -
Alju09g1533 495 Coils Coil 337 407 - -
Alju09g1533 495 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 7 491 IPR044601 GO:0003677
Alju09g1533 495 MobiDBLite consensus disorder prediction 149 173 - -
Alju09g1533 495 SUPERFAMILY HMG-box 162 235 IPR036910 -
Alju09g1533 495 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 173 241 IPR009071 -
Alju09g1533 495 Gene3D High mobility group box domain 392 494 IPR036910 -
Alju09g1533 495 Gene3D High mobility group box domain 157 273 IPR036910 -
Alju09g1533 495 Gene3D High mobility group box domain 274 369 IPR036910 -
Alju09g1533 495 Coils Coil 82 144 - -
Alju09g1533 495 Coils Coil 237 257 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Alju09g1533 HMG_box 3.7e-16 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g1533 09 39257050 39259108 Alju09g1533 09 39257050 39259108 ECH