LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju09g1529	ATGGAGGATGATTGGAGGTGGGAGCCAAGCATGCTTACGAATGAGCTGCTTCAAGGAATGGAGGCAGCGAGGAAGTTGATGGCAGAATTTAGGACAGAATCTTCAGTAGAGACCAGGGATTTGCTGGTACAGAGGATATTATCATCTTATGAAAAGGCCCTGCTAATTCTGAAATGGAATGCATCAAACTCAAATACCAATTCTCTTCCTATGGGGCCAGGATTACCTGGTTTGCCACCAGAGTCTCCAATATCTGTCAACGTAAGTCCTTTCAGAGATGACATTGATGGGGATCATCCTGAGCTTAAACCTGATTCCAAGAAAAGAAAGATGATGCCAACATGGATGGAACAAGTAAAGTCTAGCTCTGAGACTGCCCTTGAAGGACCCCAAGATGATGGCTTCAGCTGGAGAAAATATGGACAGAAAGACATCCTGGGAGCCAAATATCCTAGAAGTTACTATAGGTGCACCTTCCGCAAGACTCAGAACTGCTGGGCCACGAAGCAGATACAAAGATCAGATGAAGACCCTTCTGTATTTGACATCACTTATCGAGGAAGGCATACTTGTTCCCTGGGAAATAATGCTCCTAAATCTCCAGACCAACAAGAGAAAATACATAATTATGAAAGTGACATTCGCCCTCACGAGCCATTACAAGAGGGCCTAGTGAAATTCAGAAATAACTTGAGTGTCAATACAGATAACCTTAAAAATGAGGAGATGCAAAATCCTTTTGCTTTCCTTTCAACTTCCTCTGGATACATGACACCAACAGAAAGTCACGGTTTGCCTTCCTTGGCACCAGAGAATGATCCCTTCTGGGGGAACCTTTCACAGACAGACTTGCTATCTCCAAACACGCCAGAATCACACTATTTACCATCCCTGTCTTTCAAGATGGTCGAGTTCCATGGCCTCAAAAACCAGCCGTGCTCGGAATCTGACATTACTGAGATTATTTCAGCCAACACATCAGCCAGCAATTCTCCAATTCTCGATTTTAATTTCCCTATTGATCCGGCGGAGATTGATCCAAATTTCCCTTTTGACACCCCGGGCTTTAGCAGTATTCACTTTCAAACAGATGTTTCATATAAGGTCTGGATTTCCATTGGTATACCTTTAGCAGAAGAACGCAGCAGTCAGTTGCCAATCAGGGAATTATTAACTGTGGCACAATACATCAGCCCAAAAAAGGGTCTTGAAAGAGAGCTTTAA	1224	0.4346	MEDDWRWEPSMLTNELLQGMEAARKLMAEFRTESSVETRDLLVQRILSSYEKALLILKWNASNSNTNSLPMGPGLPGLPPESPISVNVSPFRDDIDGDHPELKPDSKKRKMMPTWMEQVKSSSETALEGPQDDGFSWRKYGQKDILGAKYPRSYYRCTFRKTQNCWATKQIQRSDEDPSVFDITYRGRHTCSLGNNAPKSPDQQEKIHNYESDIRPHEPLQEGLVKFRNNLSVNTDNLKNEEMQNPFAFLSTSSGYMTPTESHGLPSLAPENDPFWGNLSQTDLLSPNTPESHYLPSLSFKMVEFHGLKNQPCSESDITEIISANTSASNSPILDFNFPIDPAEIDPNFPFDTPGFSSIHFQTDVSYKVWISIGIPLAEERSSQLPIRELLTVAQYISPKKGLEREL	407

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju09g1529	407	Gene3D	WRKY domain	116	194	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Alju09g1529	407	FunFam	WRKY transcription factor 53	117	194	-	-
	Alju09g1529	407	MobiDBLite	consensus disorder prediction	92	109	-	-
	Alju09g1529	407	Pfam	WRKY DNA -binding domain	132	191	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Alju09g1529	407	SMART	WRKY_cls	131	193	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Alju09g1529	407	SUPERFAMILY	WRKY DNA-binding domain	130	193	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Alju09g1529	407	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	10	263	IPR044810	GO:0003700
	Alju09g1529	407	ProSiteProfiles	WRKY domain profile.	126	194	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Alju09g1529	407	MobiDBLite	consensus disorder prediction	90	109	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju09g1529	Alju-ChrAlju09	39232584	39234201	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju09g1529	7	350	WRKY Transcription Factor Family	AT4G11070	37.429	2.73e-60	195

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Alju09g1529		WRKY	3.4e-26	CL0274