Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1505 ATGGCTCATTCCTCATGTTTCATCTTCGTCTTCTTCCTCCTCTTCCTTATTTATCCCACAAAAACATCAAGCTCTCATATCTGCGATACATATTGCGACATAGACGAAACTCCCATTCAGTTCCCTTTCCATTTGGTCAAAGACAACAAATCCAATCGAAACAACAGAACTAGTCGTTGTGGCTACCCTGGTTTCGAACTTTCCTGCAACAAAAGCCAAACCATGATTCATCTCCCACACTCTGGACACTTCCTGGTTGATAAAATCTCCTACGAAAACCAAAAGCTTTGGATCAGAGACCCCGAAAATTGCCTCCCAAAACGATTCTTAAACAACAACAGCTTCAGCCTCAAAGATTCAGTCTTTCAACTCAGCGATGATTATATGCTCATGGACTTGACCTTTTTCAACTGCTCCTCCAACGTCACCCAACAGTACCCACTACCACCCGTCCCTTGCCTGAGCTCCGACCACAACCCGAACTTCTCGGTGGTCGCCTTGTTTTCGGGTCCTCAGTTTGACCCATGGGTCGCATGGTGTGACCCGATTTCCTCTGCTTCACTTCCTTATTCTATGACCAATAGATTATACTGGATGGACCTGAACGATGATATAGGCCTGCAATGGAACACGCCAAGCTGTGGAGACTGTGCAGCGAGAAAAGGACGGTGTGAGTTTTTGACGAATACAGGTCTCGAAGTTGCTTGTTATTTACCTCCCCGAACTGGTCTTTCAAAATTTGCCAAGTTTGGATTAAGCTTTGGTGTGGGAATTCCTGGATTGTTCTGTGTGATTTGGATTGCGTACTTGTGTACGGGGAAGCGAAGAGAGAGCGAAGAGCGAAGGCGGAGGAGCGATGTTGAACTGAATAATAATGTTGCCGGTCGGAGCTCTGTAGTGGTTATGGGGCTTGACGGAGCAACCATAGAGAAGTATCCGATGACCCGGATTGGTGATAGTGGGCGATTACCCGACCCGAATAACAACGTGTGCTCTATATGCCTCGGTGAGTACCAACCCCAAGACACGTTAAGGACTATACCAGATTGTAATCATTACTTTCATGCGAATTGTGTAGATGCATGGCTCCACATGAATGCTACTTGTCCTTTGTGTCGAAAATTACCTCATTCCTAA 1137 0.46 MAHSSCFIFVFFLLFLIYPTKTSSSHICDTYCDIDETPIQFPFHLVKDNKSNRNNRTSRCGYPGFELSCNKSQTMIHLPHSGHFLVDKISYENQKLWIRDPENCLPKRFLNNNSFSLKDSVFQLSDDYMLMDLTFFNCSSNVTQQYPLPPVPCLSSDHNPNFSVVALFSGPQFDPWVAWCDPISSASLPYSMTNRLYWMDLNDDIGLQWNTPSCGDCAARKGRCEFLTNTGLEVACYLPPRTGLSKFAKFGLSFGVGIPGLFCVIWIAYLCTGKRRESEERRRRSDVELNNNVAGRSSVVVMGLDGATIEKYPMTRIGDSGRLPDPNNNVCSICLGEYQPQDTLRTIPDCNHYFHANCVDAWLHMNATCPLCRKLPHS 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1505 378 Pfam Ring finger domain 330 373 IPR001841 -
Alju09g1505 378 Pfam Wall-associated receptor kinase galacturonan-binding 28 100 IPR025287 GO:0030247
Alju09g1505 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 377 IPR013083 -
Alju09g1505 378 SMART ring_2 331 372 IPR001841 -
Alju09g1505 378 ProSiteProfiles Zinc finger RING-type profile. 331 373 IPR001841 -
Alju09g1505 378 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 376 IPR046948 -
Alju09g1505 378 SUPERFAMILY RING/U-box 326 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1505 Alju-ChrAlju09 38998616 38999752 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1505 18 376 C3H Transcription Factor Family AT2G46495 33.333 7.04e-54 179