Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1504 ATGACCACCTTAATACCCTTATTCCTACTATTATTAGCAATCCAGTGTGCAAGTGGTTCTCATGAACTGGAGGCTGCATGTCCAAGCACATCTTGTGGAGGAATCGAAATCAAGTTCCCTTTCGGCTTAAAAGGAACCAACCAGAGTAGTAGCCGATGTAACTACCCTAATTTCAGTGTTTCCTGCAACAATCAGAGCCAAGCCATCTTGTCGCTTCCAGATTCTTCTGGCGACTTGCTCATCAAGGACATCGATTATGCCTTACAAACCCTTCGGGTCAACGATCCTAGTCAATGCCTACCCAGACGATTCTTGCAGGATCGTCTCAACCTTTCTTCTTCTCCCTTCGATTTCGACCCTGTTCTGTACAATCTCATCAACCTCACTTTCTTTCTTTGCCCTTATAATCTCACCCAAAATCACCTACTCACTTCAGTTCATTGTCTTAGCGATCTCGCTAATTCCTCTTTCGCTGTTACCTACCTTTGGTTGCGATCAATTCCTTCGTTCTTGAATGAATCGTGTGAGGTTATTAATTCCTCTGTTCCTTACCCGATTTCTAACATCGACCCGTGGCCTTTCTGGGTCGATATCGGCGATGATTTGCAGTTGACTTGGGGCTGGCCACGGTGTGGGCGCTGTGAATCCCGGGGACAAGATTGTGGGTTTGCCGGCGATCGGGGTCTCCGAACCGCTTGTTTCACTCGTCCCCATGAAAGCTCAGGTCTTCCGAGAGGTATAAAATATGGGATAACAATAGGAGTGGGAATCCCTGGACTGTTGTGTTTAATTGGGATCTGCTGTTTCATTTGTGGGCAGATACGACGTCGTCGGAATCTCAGGCCCAGCATAGATCTTCCCATCACATCATTCGTGGTCCAATCGGGCCCATTCAGAATGGGCCTAGACGGGTCCACAATAGAGAAGTATCCAATGACTCTTCTTGGCGAGAGTAAGAGGCTACCCAAGCCCAACGATAACACTTGCTCAATATGCTTGTCGGAGTATGAGCCCAAAGAGACATTGAGAACCATACCCGATTGCAGCCATTATTTTCATGCACACTGTATAGATGAATGGCTCAGGATGAATGCCACGTGTCCCGTTTGCCGGAATTCACCTACACTCACACCTTCTTCTACTTCTTCATCATCTATGTCTCCTCCTTCCTCCGTATCCTCTTCACATTAG 1191 0.471 MTTLIPLFLLLLAIQCASGSHELEAACPSTSCGGIEIKFPFGLKGTNQSSSRCNYPNFSVSCNNQSQAILSLPDSSGDLLIKDIDYALQTLRVNDPSQCLPRRFLQDRLNLSSSPFDFDPVLYNLINLTFFLCPYNLTQNHLLTSVHCLSDLANSSFAVTYLWLRSIPSFLNESCEVINSSVPYPISNIDPWPFWVDIGDDLQLTWGWPRCGRCESRGQDCGFAGDRGLRTACFTRPHESSGLPRGIKYGITIGVGIPGLLCLIGICCFICGQIRRRRNLRPSIDLPITSFVVQSGPFRMGLDGSTIEKYPMTLLGESKRLPKPNDNTCSICLSEYEPKETLRTIPDCSHYFHAHCIDEWLRMNATCPVCRNSPTLTPSSTSSSSMSPPSSVSSSH 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1504 396 ProSiteProfiles Zinc finger RING-type profile. 329 371 IPR001841 -
Alju09g1504 396 MobiDBLite consensus disorder prediction 375 396 - -
Alju09g1504 396 Pfam Ring finger domain 327 371 IPR001841 -
Alju09g1504 396 Pfam Wall-associated receptor kinase galacturonan-binding 27 95 IPR025287 GO:0030247
Alju09g1504 396 SUPERFAMILY RING/U-box 323 377 - -
Alju09g1504 396 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 7 374 IPR046948 -
Alju09g1504 396 CDD RING-H2_EL5-like 329 371 - -
Alju09g1504 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 375 IPR013083 -
Alju09g1504 396 SMART ring_2 329 370 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1504 Alju-ChrAlju09 38990085 38992705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1504 24 375 C3H Transcription Factor Family AT2G25410 34.066 6.47e-53 179