Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1489 ATGGAAGCGGATTTCGTCACCAATGGCATGTTCATAGAAGAACCCTCTGAGGCTGATGAAAATGCGAACAATGATAATTTATTTATTGAAGGGGAAAAGTGTGGAATTTGCATGGATGTTGTCATTGACAGGGGAGTTCTGGATTGCTGCCAGCACTGGTTCTGTTTTGTATGCATTGACAACTGGGCTTCCATCACAAATCTGTGCCCACTTTGCCAGAATGAGTTTCAGTTGATCACATGTGTTCCAGTATATGATACCATTGGAAGCAATAAAATCGAAGATGACATGTTATCCAGAGATGATGACTGGTCCATTGAAGGGAAGAATAACACTCTGTCATTTCCCTCATACTATATTGATGAAAATGCAGTTATTTGCTTGGATGGTGATGGCTGCAAAATTCGAAGCGGACCAGCAACGACTGAAGATGATTTGAGCCTTGATACATCGATTGCTTGTGATTCATGTGATATATGGTATCATGCTTTTTGTGTGGGATTTGATCCTGAAGGTACATCTGAAGTTACATGGCTATGCCCAAGATGTGTGCCAGATAAAGTTACTGAGAACATGGCTGTAAGTTCATTAGAGAAGATAACTACGGAAATTAACCCAGAAAACGGTGACAAGGAAGATCAGGCTGAGGAATCTTTTTCAGGCAAAGTTTCTGTATCTGTTGCTGATGCTGGGGAGACAGCTGTTGTTGTCTCTTTAGTTGAAGGAAACCAATGGATTCCAGTATCAAGAGAGAAGTGTTTGTCACCCCTTGAAGCTAGCAAGAATCCAATGACTGAATCGTGTGTTTCCTTGCCTGATGCAAATAATCACCAAAGTAATACGGAGAAGACTATTAATTCACCAGGGAAGCAGCAGGAGCTGGAGCTGTCCTTATCGCATGGTGTGATTTGTAGCTTGTCCTCTAACACCATAGGGCCTGATGATTTGAATAAAGGAACTCATGGAGAAAGGGGTGATCCAAGTAGCTTATGCGGAACCAATATATTAAATGAATCTCATGACACAGCTAGTATATCTAGAAATGGATCTGACATGGGTCTTCATCTTGGTTTGTCAGTTGGCTCCTTTTTATGTGTTGATGACACTGACATGAGCGCAACAAGAGATGAAGAAACTAATCTCCAGCGGTCAAATTCTGAAGAATTTAAATTGAAAGGAGATGAAGTGGAACCAAATGCTCTTAAGTACAATGCCAGAGTAAGGGGGGGAAAGAGAAAGCATGCTGATTACAGTAATGATGAGGTTCATATAGAAGTCAATAGAGATGCCGAACTCAAACCTGAAGTTGAAGTGTCGCAAAAGAAACTTAGAACTGATGGTATTCGACTGATTAATCATGAGAGTGTAGCTTGTGCTCCTCTTTCAGATAATACTAAAGTAAGCCCTTCTACTACACCTATTTCCAGACACGATGGTGTAAAACATTGCACAACACAGGAGAATGCCGCATCAGATATAATGAGTATAGTTAAAGGCACGAAGTGGAAGCCTCCAAATGAAATTTCTGGCTCAAAATCTAGTAACAAGTTAACTAAAAACAATGAAAACATGGCGGGTTTGAGGGTAAAAAAGATCATGAAGAGAGCTCCAGATCATGGGGAGTCATCCTTAGTTCAAAACCTGAGGGAAGAAATTAGAGAAGCTGTCCGCAACAAATCCTCTAAAAATTTTGAAGAAAATCTTGTTGATACAAAGCTTCTTGCTGCATTCAGGGCTGCTGTAGCAGGGCCTAAAACTGAACCTCTAAATAAGCTGCCCCCTGTGGCTTTGAAGGCGAAGAAGTCAATGTTGCAGAAAGGAAAAGTTCGTGAACATCTAACCAGGAAAATTTTTGGGACCTCAAATGGAAGAAGAAAGCGTGCGTGGGATAGGGACTGTGAAATTGAGTTTTGGAAATATCGTTGCATGAGAGCAACGAAGCCTGAAAAGATTGAAACTTTGAAGTCAGTTCTGGATCTTCTAAGAAAGAGTTCAGAGAGTGCAGAATCGAAAGAGGGTCCTGAAGGTCAGGCCAAAAATTCTATTCTTTCCAGGTTGTATTTAGCAGATACATCTGTTTTCCCACGAAAAGATGATGTCAAGCCACTTTCTGTTCTTGAAACTGATGATAACTCAGAACAGAATAAAAAACCGAACCTTTCAGGAAAAGCATCAAATCAGTCTCTTAATAATAGTCCTATTAAAGCAAAAGAGGTAAATAATATTTTACCAAAGGGCAGAGATTGCTCATCTGAAAATAAAGTAAATAAGAAGATTGTACATAGCTCTGTTGGTGGTAATTCAACTTCTGGTAAAGTACCTTCAAGCAGACACTCAGAAGGGGCAACAGGTTCTTGCCCTGGTGGCTCCAGAGTTGACTCAAAGGAGTCGAGCGTTAAATCAGATTGTATAAAGAGTGACAAAAGAAAATGGGCCTTGGAGGTTCTTGCAAGAAAAACAGCGGCTGCTAGCAAGAAAATGATAAATGACAGTCAGGGAGATAATGCAATTCTTGGAGGAAATTATCCTTTACTGGCCCAATTGCCAGCTGATATGAGACCAGTATTGGCACCCAGCCGCCGCAATAAAATTCCTATACCAGTTAGGCAGACACAACTTTACCGCCTGACTGAACACTTCTTGAGGAATGCAAATCTGTCAGTCATCCGCAGAACTGCAGATACAGAATTGGCTGTTGCAGATGCAATTAATATTGAAAAAGAGGTGGCTGACAGATCAAACAGCAAGCTAGTGTATCTGAATCTCTGTTCACAGGAGCTCTTGCACCGTCCAAATAATAGAAAATCCAATGGAGCAACAGATATAACTCCGCAGGTCTCATCAGCAGTCTCTAATGATAGATCAGAACAAAATACTGATGATGATCTTTCAACTGACCCTGCAGTTCAAATGGCCCTTAAAAATGCTGGTCTTTTGTCTGATTCTCCTCCTTGTAGTCCAAGTGAGAAAGGAGAAATACCCGATAAAGAAGTTGATCTTTCGGGACCTGATAATATTCTCGAACTGGATTTTCAAACAGAGATGGATATTTATGGGGATTTTGAGTATGATTTGGAAGATGAAGATTACATTGGTGCAGGTGTTGCTAGAGGCTTAAATTCACAAGAAGAAGAAAGCGAGTCAAAAATGAAACTCATTTTCTCTACCATGAAGAATTCAGATACTGTTTTGGATTGTATGGATTCTGAGAGATTGGAAAACAATGAGGTTACACGAGATCCCTCCTGCTCATCAAATCATGATGATGCAACCAGCACGGACCCTGCTATTAATGCAGAGCCTGGCAATTCTTCTTCCGCTCCTTCTGAGGCCCTTCCCAGTGAGCCCTGCGACGCAGAATGTGAAGAATTATATGGTCCAGAGAAAGAACCACTTGCCAAAAAATTTCCTAATGAGGAATTTATAACATCACATGGAGAGGACAAATCAGGAACTTCAACTGAAGGCAATGGTTGTCATAATAAAGTAAAAGCATCAGACCAAGCAGTAAATGCATCTGAATCTGGAAATGACAAACTTGCAAAGAATATACCGGTCACTGTGATTGCTGACAATTCATCTAATGCATCTGATGTTAGTGAAAATTTACAGAGGAAGGGAGAGAAATCTGATACCGCTCCTGAGCAGTCTGATTCTACAAATCATGTAGTTAGAAAGGTTGAAGCCTACGTCAAAGAGCATATCAGGCCACTGTGCAAGAGTGGCGTGATCACAGCTGAACAGTACAGGTGGGCTGTCGCAAAAACGACGGAAAAGGTTATGAAATACCATTGCAAGGCCAAGAATGCCAATTTCCTCATAAAAGAAGGCGAGAAGGTGAAGAAACTCGCGGAGCAGTATGTTGAAACAGCTCAACATAATAGGAAAAATTGA 3894 0.4088 MEADFVTNGMFIEEPSEADENANNDNLFIEGEKCGICMDVVIDRGVLDCCQHWFCFVCIDNWASITNLCPLCQNEFQLITCVPVYDTIGSNKIEDDMLSRDDDWSIEGKNNTLSFPSYYIDENAVICLDGDGCKIRSGPATTEDDLSLDTSIACDSCDIWYHAFCVGFDPEGTSEVTWLCPRCVPDKVTENMAVSSLEKITTEINPENGDKEDQAEESFSGKVSVSVADAGETAVVVSLVEGNQWIPVSREKCLSPLEASKNPMTESCVSLPDANNHQSNTEKTINSPGKQQELELSLSHGVICSLSSNTIGPDDLNKGTHGERGDPSSLCGTNILNESHDTASISRNGSDMGLHLGLSVGSFLCVDDTDMSATRDEETNLQRSNSEEFKLKGDEVEPNALKYNARVRGGKRKHADYSNDEVHIEVNRDAELKPEVEVSQKKLRTDGIRLINHESVACAPLSDNTKVSPSTTPISRHDGVKHCTTQENAASDIMSIVKGTKWKPPNEISGSKSSNKLTKNNENMAGLRVKKIMKRAPDHGESSLVQNLREEIREAVRNKSSKNFEENLVDTKLLAAFRAAVAGPKTEPLNKLPPVALKAKKSMLQKGKVREHLTRKIFGTSNGRRKRAWDRDCEIEFWKYRCMRATKPEKIETLKSVLDLLRKSSESAESKEGPEGQAKNSILSRLYLADTSVFPRKDDVKPLSVLETDDNSEQNKKPNLSGKASNQSLNNSPIKAKEVNNILPKGRDCSSENKVNKKIVHSSVGGNSTSGKVPSSRHSEGATGSCPGGSRVDSKESSVKSDCIKSDKRKWALEVLARKTAAASKKMINDSQGDNAILGGNYPLLAQLPADMRPVLAPSRRNKIPIPVRQTQLYRLTEHFLRNANLSVIRRTADTELAVADAINIEKEVADRSNSKLVYLNLCSQELLHRPNNRKSNGATDITPQVSSAVSNDRSEQNTDDDLSTDPAVQMALKNAGLLSDSPPCSPSEKGEIPDKEVDLSGPDNILELDFQTEMDIYGDFEYDLEDEDYIGAGVARGLNSQEEESESKMKLIFSTMKNSDTVLDCMDSERLENNEVTRDPSCSSNHDDATSTDPAINAEPGNSSSAPSEALPSEPCDAECEELYGPEKEPLAKKFPNEEFITSHGEDKSGTSTEGNGCHNKVKASDQAVNASESGNDKLAKNIPVTVIADNSSNASDVSENLQRKGEKSDTAPEQSDSTNHVVRKVEAYVKEHIRPLCKSGVITAEQYRWAVAKTTEKVMKYHCKAKNANFLIKEGEKVKKLAEQYVETAQHNRKN 1297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1489 1297 MobiDBLite consensus disorder prediction 1074 1161 - -
Alju09g1489 1297 ProSitePatterns Zinc finger RING-type signature. 50 59 IPR017907 -
Alju09g1489 1297 SUPERFAMILY RING/U-box 23 79 - -
Alju09g1489 1297 Coils Coil 545 565 - -
Alju09g1489 1297 MobiDBLite consensus disorder prediction 930 954 - -
Alju09g1489 1297 ProSiteProfiles Zinc finger RING-type profile. 34 73 IPR001841 -
Alju09g1489 1297 MobiDBLite consensus disorder prediction 977 1001 - -
Alju09g1489 1297 MobiDBLite consensus disorder prediction 1122 1146 - -
Alju09g1489 1297 Coils Coil 651 671 - -
Alju09g1489 1297 MobiDBLite consensus disorder prediction 704 799 - -
Alju09g1489 1297 SUPERFAMILY FYVE/PHD zinc finger 148 188 IPR011011 -
Alju09g1489 1297 MobiDBLite consensus disorder prediction 1202 1221 - -
Alju09g1489 1297 Pfam Zinc finger, C3HC4 type (RING finger) 34 72 IPR018957 GO:0046872
Alju09g1489 1297 MobiDBLite consensus disorder prediction 1078 1111 - -
Alju09g1489 1297 PANTHER RING FINGER PROTEIN 41, 151 115 1288 - -
Alju09g1489 1297 MobiDBLite consensus disorder prediction 1192 1221 - -
Alju09g1489 1297 MobiDBLite consensus disorder prediction 1147 1161 - -
Alju09g1489 1297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 111 IPR013083 -
Alju09g1489 1297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 202 IPR013083 -
Alju09g1489 1297 MobiDBLite consensus disorder prediction 717 737 - -
Alju09g1489 1297 Pfam PHD-finger 149 185 IPR019787 -
Alju09g1489 1297 MobiDBLite consensus disorder prediction 930 965 - -
Alju09g1489 1297 MobiDBLite consensus disorder prediction 756 783 - -
Alju09g1489 1297 ProSiteProfiles Zinc finger PHD-type profile. 66 186 IPR019787 -
Alju09g1489 1297 SMART PHD_3 132 184 IPR001965 -
Alju09g1489 1297 SMART ring_2 124 183 IPR001841 -
Alju09g1489 1297 SMART ring_2 34 72 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1489 Alju-ChrAlju09 38887054 38898036 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1489 29 76 C3H Transcription Factor Family AT2G39100 35.294 6.00e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Alju09g1489 PHD 7.6e-08 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g1489 09 38887054 38898036 Alju09g1489 09 38887054 38898036 ECH