Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1478 ATGTTGAATCGTGGAGGGTCTTTTTCGATGTCTTCAGCTGAAGGTGGTGGTGGTGGGGATGATCTGTATGAAGAACTATGGAAGGCCTGTGCAGGACCTCTTGTCGACGTTCCTCGGGCCAACGAGAGGGTGTTCTATTTTCCTCAAGGACACATGGAGCAATTGGAGGCATCAACAAATCAAGAACTTAATCATAGGATTCCGGTTTTCAACCTTCCCTCAAAGATCCTTTGTCGCGTGGTGAACGTCCATCTACTGGCTGAGCCAGAAACTGACGAGGTTTACGCACAAATTACTCTGGTGCCTGAATCCGATCAAAATGAGCCTACCAGCCCAGATCCATGCTCCGCCGAACTTCCAAGGCCAGCAGTTCATTCATTCTGCAAGGTTTTGACGGCATCTGATACAAGCACCCATGGTGGGTTCTCTGTTCTTAGAAAACACGCCACTGAATGCCTTCCTCCTCTGGACATGTCCCAACCAACCCCTACTCAGGAATTGGTTGCCCATGATCTTCACGGTTATGAGTGGCGCTTTAAGCATATATTCAGAGGTCAGCCTCGTAGGCATTTGCTCACAACTGGATGGAGTACTTTTGTTACTTCAAAGAGATTAGTTGCTGGAGACACCTTCGTGTTTTTAAGAGGGGTCAATGGAGAATTACGTGTTGGAGTGAGGCGTCATGCTCGTCAGCAGAGTAGCATGCCATCATCCGTAATTTCCAGTCAGAGTATGCACCTCGGAGTTCTTGCAACTGCCTCTCATGCCGTTGCGACCCAAACTCTTTTTATTGTATACTATAAACCAAGGACAAGTCAATTTATCATAAGCGTGAACAAGTATTTAGAGGCTATCAACAATAAGTTTGCCGTCGGTTTGAGGTTTAAGATGAGGTTTGAGGGGGATGAGTCTCCTGAAACTGACAAGAGATTTTCGGGCACTATTATTGGAGTGGAAGATATTTCTCCTCACTGGGTAAATTCAAGCTGGCGATCGCTCAAGGTTCAGTGGGATGAACCTGCTGCTGTTTCAAGGCCAGATAAGGTTTCACCATGGGAAGTGGAACCTTCTCTGGCTCCCATCACTTCATCTTCGGTTCAACCTCCTGTTGTAAAGACCAAGAGACCTCGACCACCAAGTGAAATTCCAGATCTTGACACAACTTCCACTGCCTCTGCTTTCTGGAATTCTGAGCTGGTGCAACCTGATATTACCCAACTTGGAGTTATGGCTGAAAGCAATAGGACTGACAATTCCGGTTTGTGGCATCACAGTCAAGCTGAAATGAATAGTAAAAGCAGCAGCAACACTCTTTCAAGAAATCAAACAGAAGGGAGCTGGCTATCTTCTCCCCATTCAAGCGGTCCTCCGCAACTGTTGCAGGACACAACAGATGATGGCAAGAGCGTCTCTGCTTGGCCTGTTCACTCAGTTCATCCGCCATCTCACTCATCACGACTGAACAATGATCATGTGCTTGAACAAGGTGGCAAGGAGAATAAAGTTGAGATTGCTACAAGCTGTCGGTTGTTTGGGATTGAGCTTATTGGTTATTCCCAAAATTCAACTGCTATGGGGAAGGCACCTGCACCTGCACCTGCACCTGCAGCTGGTATACTTAATGGTCCTTCTGAAAGTCATGTCAATGCTTTGTCTGGAACTGATACAGACCGTAAGTATAACATCTCAAAGGCTTCCTATGACGGGAAACAAGAACAGCTACAAGTAAAGGAGACTCAGAGCAAGCAAATATGTTCCAGAAGTCGCACCAAGGTTCAAATGCAGGGAGTCGCAGTGGGTCGTGCTGTGGACTTGGCCATGTTGGATGGTTATGATCAACTTATAGATGAGTTGGAGGATATGTTTGACATAAAAGGACAACTTAAAGATAGGAAGAAATGGGAAATTGTCTTCACTGATGATGAAGGGGATATGATGCTTGTGGGTGATGATCCATGGCCAGAATTCTGTAGTATGGTCAGAAGAATATTCATTTGTTCCAGCCAGGATGTGAAGAAGATGAGTACGGGAAGCAAATTGCCTATTTCACCAATGGAAGGTGATGGGACTGTAATAAGTGGGAGCACAGCTGAGACCTGA 2100 0.461 MLNRGGSFSMSSAEGGGGGDDLYEELWKACAGPLVDVPRANERVFYFPQGHMEQLEASTNQELNHRIPVFNLPSKILCRVVNVHLLAEPETDEVYAQITLVPESDQNEPTSPDPCSAELPRPAVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMSQPTPTQELVAHDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGVNGELRVGVRRHARQQSSMPSSVISSQSMHLGVLATASHAVATQTLFIVYYKPRTSQFIISVNKYLEAINNKFAVGLRFKMRFEGDESPETDKRFSGTIIGVEDISPHWVNSSWRSLKVQWDEPAAVSRPDKVSPWEVEPSLAPITSSSVQPPVVKTKRPRPPSEIPDLDTTSTASAFWNSELVQPDITQLGVMAESNRTDNSGLWHHSQAEMNSKSSSNTLSRNQTEGSWLSSPHSSGPPQLLQDTTDDGKSVSAWPVHSVHPPSHSSRLNNDHVLEQGGKENKVEIATSCRLFGIELIGYSQNSTAMGKAPAPAPAPAAGILNGPSESHVNALSGTDTDRKYNISKASYDGKQEQLQVKETQSKQICSRSRTKVQMQGVAVGRAVDLAMLDGYDQLIDELEDMFDIKGQLKDRKKWEIVFTDDEGDMMLVGDDPWPEFCSMVRRIFICSSQDVKKMSTGSKLPISPMEGDGTVISGSTAET 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1478 699 FunFam Auxin response factor 125 229 - -
Alju09g1478 699 MobiDBLite consensus disorder prediction 359 387 - -
Alju09g1478 699 ProSiteProfiles PB1 domain profile. 587 668 IPR000270 GO:0005515
Alju09g1478 699 SUPERFAMILY CAD & PB1 domains 588 663 - -
Alju09g1478 699 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Alju09g1478 699 Pfam AUX/IAA family 563 671 IPR033389 -
Alju09g1478 699 SMART B3_2 127 229 IPR003340 GO:0003677
Alju09g1478 699 FunFam Auxin response factor 288 360 - -
Alju09g1478 699 SUPERFAMILY DNA-binding pseudobarrel domain 118 256 IPR015300 -
Alju09g1478 699 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 675 IPR044835 GO:0003677|GO:0006355|GO:0009725
Alju09g1478 699 MobiDBLite consensus disorder prediction 675 699 - -
Alju09g1478 699 CDD B3_DNA 125 227 IPR003340 GO:0003677
Alju09g1478 699 Gene3D - 124 229 IPR015300 -
Alju09g1478 699 Pfam Auxin response factor 253 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Alju09g1478 699 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Alju09g1478 699 MobiDBLite consensus disorder prediction 426 470 - -
Alju09g1478 699 FunFam Auxin response factor 582 675 - -
Alju09g1478 699 MobiDBLite consensus disorder prediction 426 489 - -
Alju09g1478 699 Gene3D - 583 675 - -
Alju09g1478 699 Gene3D - 288 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1478 Alju-ChrAlju09 38815272 38818907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1478 18 680 B3 DNA Binding Superfamily AT4G23980 59.314 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Alju09g1478 AUX_IAA 1.5e-12 CL0072