Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1415 ATGGTTCGATTGTCATCAAGTCGGATTTTTCGGACTCAAACAGACCCGACGAAAATAACCCTAGCTACCTGCTTTTCTGAAGCCTGCGTGAAGAACGTTCCCACCACGCGACCTTCCCCACCCAGCATCTCTCCGCTGATCACCGTCCCTCAAGCTTGTGCGACAAATTCAGAATGCAAGAAGAGCTGTCCTGTCGTGAGAACCGGTAGATTGTGTATTGAGGTTACTGACAAATCTAAAATTGCTTACATATCCGAGGAACTGTGCATTGGATGCGGTATTTGTGTCAAGAAATGTCCATTTGAAGCCATCCAGATTATCAACCTGCCAAAGGACCTGGACAAAGACACAACTCACAGATATGGTCCTAACACTTTTAAATTACATAGGTTGCCAGTACCCAGGCCAGGTCAAGTGCTTGGTTTGGTTGGAACAAATGGAATTGGAAAGTCCACTGCTCTTAAAGTTCTTGCTGGAAAATTGAAACCTAACTTGGGCCGTTTCAATAACCCACCCGACTGGCAGGAAATCTTAACCTATTTTCGAGGATCTGAACTGCAGAACTATTTCACTCGCATCCTTGAGGATGACTTGAAGGCCATTATAAAGCCTCAATACGTTGATCATATCCCTAGAGCTGTGCAAGGAAATGTGCAGGAGACGCTGGACCAGAAAAATGAGAGAGATATGAAGCAAGAACTTTGTAATGATCTTGACCTAAACCAGGTTATAGATCGTAATGTTGGTGATCTTTCTGGTGGGGAACTCCAAAGGTTTGCCATTGCAGTTGTTGCGATCCAGAATGCTGAAATATACATGTTTGATGAACCTTCTAGTTACCTTGATGTAAAACAAAGGCTGAAAGCTGCCCAAGTTATTCGATCTTTGCTCAGGCCTAATAGCTATGTAATTGTTGTGGAGCATGATCTTAGTGTCTTGGACTACTTGTCAGACTTTATTTGCTGTTTATATGGAAAACCTGGTGCATATGGGGTCGTAACACTTCCTTTCTCAGTTAGAGAAGGAATTAACATCTTCTTGGCCGGTTTTGTCCCAACAGAAAATCTGAGGTTCCGGGATGATTCGCTGACCTTCAAGGTTGCTGAGACTCCTCAAGAGAGTGGGGATGATGCTCAAACATATGCTCGATACAAATACCCAACAATGACTAAAACTCAAGGAAATTTTAAGCTTCGTGTTGTTGAAGGAGAATTTACCGATTCTCAGATTGTTGTGATGTTGGGTGAGAATGGGACAGGAAAGACTACATTTATTCGCATGCTGGCTGGTTTATTGAAACCTGACTCCATAGAAGGGGGCGCTGATACAGAAATGCCTGAGTTTAATGTGTCATACAAGCCCCAGAAGATTAGCCCTAAGTTCCAATCAACAGTCAGACACTTGCTCCATTCAAAGATACGTGATGCATACACACACCCGCAATTCATCTCAGATGTGATGAAGCCACTTCTTATTGAACAATTAATGGACCAAGAAGTTGTTAACCTTTCTGGTGGAGAGTTGCAAAGAGTTGCATTATGTTTATGTCTTGGGAAGCCTGCAGACATCTATTTGATAGATGAGCCTAGTGCATATCTTGACTCAGAGCAGCGTATTCATGCTGCCAAAGTTATTAAGAGGTTTATCCTCCATGCAAAGAAAACTGCATTTGTGGTGGAGCACGATTTTATCATGGCAACATATCTTGCTGATAGAGTTATTGTTTATGAGGGGACTCCTTCAATTGACTGTACTGCTAATTCACCACAATCATTGTTGACTGGGATGAACCTATTCTTATCGCACCTGGATATCACATTTAGAAGAGATCCAACTAATTACCGCCCAAGGATTAACAAACTTGATTCAACCAAAGATCGGGAGCAGAAATCAGCTGGCTCATATTATTATCTTGATGACTAA 1923 0.4238 MVRLSSSRIFRTQTDPTKITLATCFSEACVKNVPTTRPSPPSISPLITVPQACATNSECKKSCPVVRTGRLCIEVTDKSKIAYISEELCIGCGICVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKVLAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDDLKAIIKPQYVDHIPRAVQGNVQETLDQKNERDMKQELCNDLDLNQVIDRNVGDLSGGELQRFAIAVVAIQNAEIYMFDEPSSYLDVKQRLKAAQVIRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLRFRDDSLTFKVAETPQESGDDAQTYARYKYPTMTKTQGNFKLRVVEGEFTDSQIVVMLGENGTGKTTFIRMLAGLLKPDSIEGGADTEMPEFNVSYKPQKISPKFQSTVRHLLHSKIRDAYTHPQFISDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIHAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGTPSIDCTANSPQSLLTGMNLFLSHLDITFRRDPTNYRPRINKLDSTKDREQKSAGSYYYLDD 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1415 640 CDD ABC_RNaseL_inhibitor_domain1 112 366 IPR034348 -
Alju09g1415 640 FunFam ATP-binding cassette, sub-family E, member 1 47 366 - -
Alju09g1415 640 Pfam ABC transporter 401 531 IPR003439 GO:0005524
Alju09g1415 640 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 401 576 IPR027417 -
Alju09g1415 640 Gene3D - 45 366 IPR027417 -
Alju09g1415 640 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 378 603 IPR003439 GO:0005524
Alju09g1415 640 ProSitePatterns ABC transporters family signature. 251 265 IPR017871 GO:0005524|GO:0016887
Alju09g1415 640 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 51 640 IPR013283 -
Alju09g1415 640 PRINTS ABC transporter family E signature 86 110 IPR013283 -
Alju09g1415 640 PRINTS ABC transporter family E signature 58 73 IPR013283 -
Alju09g1415 640 PRINTS ABC transporter family E signature 141 166 IPR013283 -
Alju09g1415 640 PRINTS ABC transporter family E signature 190 216 IPR013283 -
Alju09g1415 640 PRINTS ABC transporter family E signature 174 190 IPR013283 -
Alju09g1415 640 PRINTS ABC transporter family E signature 113 133 IPR013283 -
Alju09g1415 640 SMART AAA_5 407 581 IPR003593 GO:0016887
Alju09g1415 640 SMART AAA_5 136 328 IPR003593 GO:0016887
Alju09g1415 640 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 80 109 IPR017896 -
Alju09g1415 640 CDD ABC_RNaseL_inhibitor_domain2 384 633 - -
Alju09g1415 640 Gene3D - 370 638 IPR027417 -
Alju09g1415 640 Pfam ABC transporter 136 278 IPR003439 GO:0005524
Alju09g1415 640 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 89 100 IPR017900 -
Alju09g1415 640 FunFam ATP-binding cassette sub-family E member 1 368 638 - -
Alju09g1415 640 ProSitePatterns ABC transporters family signature. 503 517 IPR017871 GO:0005524|GO:0016887
Alju09g1415 640 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 104 349 IPR003439 GO:0005524
Alju09g1415 640 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 323 IPR027417 -
Alju09g1415 640 Pfam 4Fe-4S binding domain 83 105 IPR017896 -
Alju09g1415 640 SUPERFAMILY 4Fe-4S ferredoxins 49 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1415 Alju-ChrAlju09 38198613 38203875 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1415 131 313 Calmodulin-binding Proteins AT2G36910 27.979 1.78e-07 52.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g1415 09 38198613 38203875 Alju09g1415 09 38198613 38203875 ECH