Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1397 ATGGGATCCGGTGGTAGTAAAGCCGTTGCTTCTTGCAATTCGTCGTCGACGTCGTCGTCTTCGGGCAGTTTTCGCAAGGGTCGATCTAGAGGGCATAGAGGTTTTCAGTCGTATTGTTTAGGAACAACTTCTGGATCTCATGACAGTGACAATGACGACCAGGTGTGTGATCAAAATAAAGAAAACGATAGTAATGTTACATACTCCAATGGTGATGAAACAGATGCAGATGAGATGATATCAGAGTCTTTCAGAAAGATCGAATCTGATAAAATGCCATGCATCCCTTCTAATGTCCACCTTGATGAGTGGAATCAAACAGGCATTTCCAATACTGCATCTAGAACTGGTAGCAGTTCTGATCGTCCAGCTTCAACTCAGTCCTTGAACCCTTCAAGTCGATTCCTTTCTCGGTTTAGCCTTATTCCTGGTAATGTAAGCTTCAGACTAAGCAGAACCACAAGTTTGGGGTCATCACGGCCTTGCCCTGTTTCTTCTGCTGGTCTCTCAATATTTAACAGTGAAGATGACCTTAATCCACAGCCTGGACCTACTGGCAGCTTGGCTAATCAAAATGAAGCTGTACAATGCAATGACTTGCTTCCTGCGCCACAATGCTATGAAGACACTTCTATTAATTTAAGGTCTTCATCAGATTCCTATGGCAACCTGCAAAACAATTCAACAAATTCTTCTATGCAGAATATGAGTAGAGATGAAAATGGTATGAGAGAAGGGTTCAGTATTAACTTATTTTCTCCAAGAATCGATACCAGAACAGAAAATGTTGAAATGAGACAAAATGATCGCAGAAATGGAACTCGAGAACCTGTTGAACGGAATGTTCGCTTTAGTCGTACTTTGAGTGTTGGAAGACTTCGTGATAGGGTTCTTCGTCGATCAACAGTATCAGACTTCACTTTTTGTCCGCTGCAACAAGAAAGGGATGCTACAGATGCTAGTCAAGATATTGGAAGACAAGCAGGGGAGAGAGAGTCAATAGTGCTACCATCTGATAGTGACTCTACAAGTTTCCCTTCTACCTCTGGATATCCTCCATCCAATATGTCTAGCTCCTTGTTTGGCATCCAAGACTATGAGGTTGAGTCTTCACGATCAAGAGAAGCTAGGTACCGTGATCTACTGGAAAATAGATCCAATTTCCTAGAACGGAGAAGAAGAATACGCTCCCAGGTCCGTGCTCTTCAACGATTGGGCAGCCGATTTGAAAACCTGTCTGGGCATGACAGGTCATGTATTTTGTCTGGCCAACATAGAAATGGCCGTTGTACATGCCGAATCAGTAGTCGTGATGCCAATGCTAATGATGATACTGGGGCTAGGGCTAGCATATCAAGAATTGTTATGCTTGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCAGTGGTTCTATCTTCCCGCCCTTCTGTTTCTTCTATTGGATCTGTTCCTGCACCTTATGAAGTTGTAGAATCCTTGCCTGTCAAATTATACGCAAAGTTGCATAAACATCAGGACGATGCTGCTCAATGCTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGAGAGTACTACCTTGTCATCATGAATTTCATGTAACATGCATAGACAAGTGGCTAAAGGAGATTCACAGGGTATGCCCACTATGCCGTGGGGATATCTGCGTTGCTGATTCGATACCAGCCGGGAACTGA 1713 0.4332 MGSGGSKAVASCNSSSTSSSSGSFRKGRSRGHRGFQSYCLGTTSGSHDSDNDDQVCDQNKENDSNVTYSNGDETDADEMISESFRKIESDKMPCIPSNVHLDEWNQTGISNTASRTGSSSDRPASTQSLNPSSRFLSRFSLIPGNVSFRLSRTTSLGSSRPCPVSSAGLSIFNSEDDLNPQPGPTGSLANQNEAVQCNDLLPAPQCYEDTSINLRSSSDSYGNLQNNSTNSSMQNMSRDENGMREGFSINLFSPRIDTRTENVEMRQNDRRNGTREPVERNVRFSRTLSVGRLRDRVLRRSTVSDFTFCPLQQERDATDASQDIGRQAGERESIVLPSDSDSTSFPSTSGYPPSNMSSSLFGIQDYEVESSRSREARYRDLLENRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCTCRISSRDANANDDTGARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPYEVVESLPVKLYAKLHKHQDDAAQCYICLVEYEDGDSMRVLPCHHEFHVTCIDKWLKEIHRVCPLCRGDICVADSIPAGN 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1397 570 MobiDBLite consensus disorder prediction 336 358 - -
Alju09g1397 570 MobiDBLite consensus disorder prediction 217 240 - -
Alju09g1397 570 SUPERFAMILY RING/U-box 493 563 - -
Alju09g1397 570 ProSiteProfiles Zinc finger RING-type profile. 515 557 IPR001841 -
Alju09g1397 570 Pfam Ring finger domain 514 557 IPR001841 -
Alju09g1397 570 MobiDBLite consensus disorder prediction 329 358 - -
Alju09g1397 570 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 568 - -
Alju09g1397 570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 479 562 IPR013083 -
Alju09g1397 570 MobiDBLite consensus disorder prediction 1 77 - -
Alju09g1397 570 FunFam Putative RING zinc finger domain superfamily protein 484 562 - -
Alju09g1397 570 SMART ring_2 515 556 IPR001841 -
Alju09g1397 570 MobiDBLite consensus disorder prediction 60 74 - -
Alju09g1397 570 MobiDBLite consensus disorder prediction 1 25 - -
Alju09g1397 570 MobiDBLite consensus disorder prediction 109 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1397 Alju-ChrAlju09 37847873 37851859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1397 48 564 C3H Transcription Factor Family AT5G45290 46.409 2.45e-116 354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g1397 09 37847873 37851859 Alju09g1397 09 37847873 37851859 ECH