Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1378 ATGGCTGCAAAACTCACCAGCGGGGCGATAATGACGCTGTGTAGAGACGATTTCTCTTACGATGACCTGAAGCCTGTGCTTCAAGTGATTGACTTGAAGTTGGTGCAGTCGCAGCAGCATAACAACACGGAGAGGTATAGGCTTGTGCTTTCAGATGGTTCCCATTGCCAGCAAGGCATGCTTGCTACTCAGAAGAACGATTTGGTCCATGCGGGGCGATTGCAGAAGGGCTCTGTTGTTAAGCTGACTCAGTTTGTCTGTAATTGTGTCCAGAGTCGCAAGATTATCATCATTATCGAGCTGGAAATGGTCCTTGACAGATGTGATCCCATTGGACAACCTGTCCCGGCGCAGAGAGCTGTACCTGCAGCATCTTCCACTGCATCATCTCCCACTGATCAGTCTGGAGTTACCACAGGGAATCCTCAGTCTTTAACAAGTAACTCATCAGGTGGCAAGATTGCTCGATCCAATGCGACTGGGCCATCTCTAGATCATTCACAAATCAATCTTACTGCCAATGGTGCAAGATATGGCGCCGCAACTGCCTCTTCTCCATTTCCTAAAGCAGAGCCTACTTTTCCTAAATCCAACCCATTCAATGGGTCCTATGGTGATCAGAACATGGGATTTCAGAACCCTCGACCAGAACCTCCAAGACCCCCACAACATGTCTATGTTCGTCCACCACAGCCTATGCATAGACAGCCTTATCCAGTCTACAATAACAGGGGACAAATAGGTAGAAATGAAGCTTTCCCAAGGATAATTCCAATAGCTGTATTGAATCCATACTCAAGCATGTGGACAATTAAGGCTAGAGTTACAGCAAAGGCAAGCCTCAGACAATACCACAATGCCAGAGGTGATGGCAAAGTATTTTCTTTTGATCTTCTTGATTCTGACGGTGGAGAAATTCGAGCAACTTGCTTTAATGCAGTGGCTGAACAATTCTATCATCAAATTGAAATTGGTAAAGTATATCTGATTTCCAAGGGGAGTCTAAAGCCAGCTCAAAAAAATTTTAATCACCTTCCTAATGATCAAGAACTGACCCTTGATGTTACTTCTACCATACAGCCATGTGATGATGACGAGTCAATTCCAATGCGTCTTTTTAAATTTTGTCCTATTAGTGATGTTGAAAGCATGGAAAATTCGAGTGTTGTGGATGTGATTGGCGTGGTATTTTCTATTAGTCCTACAACTTCGATCATGAAAAAAAATGGTACTGAAACTCATAAGAGAGCCCTCCAGTTGAAGGACATCTCTGGTTGCAGTGTTGAGTTAACCCTTTGGGGAGAGTTCTGTAATGCAGTAGGACAACAGTTGCAGAATACTTGTGACTCAGGTGCATTTCCAGTTTTGGCTGTGAAAGCTGCCAGGGTAAATGAATTCAATGGGAAGGCCCTTGGGACCATATCTAATAGTCAGCTATTTATAGAGCCTGATCTTCCTGAGGCCTACAGGTTGAGAGAATGGTTTGACAAGGAAGGGAAGAATGCTCCAACTGTTTCTATTTCCAGAGAATCATTCAATTTTGGTAAGACTGATATGAGGAAGACTATATCTCAGATTAAAGATGAGAAGTTAGGGACTTCTGAGAAGCCTGATTGGATTAGCATCTGTGCAAGTGTTTCATTCATTAAGGCTGATTCTTTCTGCTATACAGCCTGTCCCATCATGATAGGGGATAGGAAATGTAGCAAAAAAGTGTCCAATAACGGAGATGGAAAATGGCAGTGTGATAGATGTGACCAGTATGTTGATGCATGTGAATATAGGTATATCTTGCAACTCCAAATACAGGACCACACTGGGCTAACATGGGCTACTGCATTTCAGGAGTGTGGTGAGGAGATAATGGGCCTACCTGCCAAGGATCTTTACTATATGAAATATGAAGAGCAGGATGATGAAAGATTTGCACAAGTTATCCGTAAGGTTCTTTTCACTAAATACCTATTCAAGTTAAAAGTTAAGGAAGAGACTTTTGGTGATGAACAGCGTGTGAAGTCAACATTAGTGAAAGCAGAGAAGGTGAACTTTTCATCTGAATCAAGATTTGTTTTGGATTTAATTGATAAGCTTAAAGATGAGAAGGTGGAAGGTATGGATCCTAACTCTGTAATTAGTAACGCCGGACCGCAGAATGCTGGAATTGGCCCGGCTAATGCTATAAAGAGCAGTAGTGGTGCGAGTAGAGAATATGGGATGCCAGCAAATCAAGTGGGTCAGTATGAACAGCAATATAGGAGTTCATTTGCTTCAGCTGGCCCTTCTAGTTCATTTATGCCTTGCAGCAATTGTGGAGGCTCTGGCCATAGCTCCATGCATTGCCCAAATGTTACAAGTGTACCTCGACAGTCCATGGGAGGAGGGGCCTTTGCAAATAGGGTATCTTCAGGGGTAGGTGGTGGTGGTGCCTCCGGTGAATGCTTTAAATGTCATCAAACTGGTCACTGGGCAAGAGACTGTCCTGGTCTCAATGCTGCAGCTCCTTCTGCTTATGGAGGTAGTGTTGTTCATGGAGGCAATGGGTTTGTTCAAAGGCAACAGCGTGAAGGATTTTGA 2574 0.4367 MAAKLTSGAIMTLCRDDFSYDDLKPVLQVIDLKLVQSQQHNNTERYRLVLSDGSHCQQGMLATQKNDLVHAGRLQKGSVVKLTQFVCNCVQSRKIIIIIELEMVLDRCDPIGQPVPAQRAVPAASSTASSPTDQSGVTTGNPQSLTSNSSGGKIARSNATGPSLDHSQINLTANGARYGAATASSPFPKAEPTFPKSNPFNGSYGDQNMGFQNPRPEPPRPPQHVYVRPPQPMHRQPYPVYNNRGQIGRNEAFPRIIPIAVLNPYSSMWTIKARVTAKASLRQYHNARGDGKVFSFDLLDSDGGEIRATCFNAVAEQFYHQIEIGKVYLISKGSLKPAQKNFNHLPNDQELTLDVTSTIQPCDDDESIPMRLFKFCPISDVESMENSSVVDVIGVVFSISPTTSIMKKNGTETHKRALQLKDISGCSVELTLWGEFCNAVGQQLQNTCDSGAFPVLAVKAARVNEFNGKALGTISNSQLFIEPDLPEAYRLREWFDKEGKNAPTVSISRESFNFGKTDMRKTISQIKDEKLGTSEKPDWISICASVSFIKADSFCYTACPIMIGDRKCSKKVSNNGDGKWQCDRCDQYVDACEYRYILQLQIQDHTGLTWATAFQECGEEIMGLPAKDLYYMKYEEQDDERFAQVIRKVLFTKYLFKLKVKEETFGDEQRVKSTLVKAEKVNFSSESRFVLDLIDKLKDEKVEGMDPNSVISNAGPQNAGIGPANAIKSSSGASREYGMPANQVGQYEQQYRSSFASAGPSSSFMPCSNCGGSGHSSMHCPNVTSVPRQSMGGGAFANRVSSGVGGGGASGECFKCHQTGHWARDCPGLNAAAPSAYGGSVVHGGNGFVQRQQREGF 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1378 857 Gene3D - 255 365 IPR012340 -
Alju09g1378 857 FunFam Replication protein A subunit 255 364 - -
Alju09g1378 857 Pfam OB-fold nucleic acid binding domain 269 356 IPR004365 GO:0003676
Alju09g1378 857 Pfam Zinc knuckle 812 827 IPR001878 GO:0003676|GO:0008270
Alju09g1378 857 CDD RPA1_DBD_C 523 696 IPR047192 -
Alju09g1378 857 SMART c2hcfinal6 766 782 IPR001878 GO:0003676|GO:0008270
Alju09g1378 857 SMART c2hcfinal6 812 828 IPR001878 GO:0003676|GO:0008270
Alju09g1378 857 MobiDBLite consensus disorder prediction 180 223 - -
Alju09g1378 857 SUPERFAMILY Nucleic acid-binding proteins 373 502 IPR012340 -
Alju09g1378 857 CDD RPA1_DBD_A 258 361 - -
Alju09g1378 857 CDD RPA1N 8 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Alju09g1378 857 ProSiteProfiles Zinc finger CCHC-type profile. 767 782 IPR001878 GO:0003676|GO:0008270
Alju09g1378 857 NCBIfam replication factor-a protein 1 (rpa1) 249 696 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Alju09g1378 857 Pfam Replication protein A OB domain 378 481 IPR031657 -
Alju09g1378 857 MobiDBLite consensus disorder prediction 120 167 - -
Alju09g1378 857 SUPERFAMILY Nucleic acid-binding proteins 1 112 IPR012340 -
Alju09g1378 857 FunFam Replication protein A subunit 367 505 - -
Alju09g1378 857 Pfam Replication factor-A C terminal domain 539 688 IPR013955 -
Alju09g1378 857 ProSiteProfiles Zinc finger CCHC-type profile. 813 827 IPR001878 GO:0003676|GO:0008270
Alju09g1378 857 SUPERFAMILY Retrovirus zinc finger-like domains 805 830 IPR036875 GO:0003676|GO:0008270
Alju09g1378 857 SUPERFAMILY Nucleic acid-binding proteins 256 368 IPR012340 -
Alju09g1378 857 CDD RPA1_DBD_B 389 496 - -
Alju09g1378 857 Gene3D - 507 697 IPR012340 -
Alju09g1378 857 MobiDBLite consensus disorder prediction 196 210 - -
Alju09g1378 857 FunFam Replication protein A subunit 506 697 - -
Alju09g1378 857 PANTHER REPLICATION FACTOR A 1, RFA1 269 669 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Alju09g1378 857 Gene3D - 367 506 IPR012340 -
Alju09g1378 857 Pfam Replication factor-A protein 1, N-terminal domain 5 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Alju09g1378 857 Gene3D - 3 118 IPR012340 -
Alju09g1378 857 FunFam Replication protein A subunit 4 118 - -
Alju09g1378 857 SUPERFAMILY Nucleic acid-binding proteins 520 697 IPR012340 -
Alju09g1378 857 Gene3D - 741 837 - -
Alju09g1378 857 MobiDBLite consensus disorder prediction 119 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1378 Alju-ChrAlju09 37672712 37676221 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1378 1 793 Core DNA Replication Machinery Family AT5G45400 51.425 0.0 852