Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1363 ATGGCTGCAAATCTCACCGGTGGCGCGATAATGACGATGTATAGAGACGATTTCTCTTGCGAGGACCTGCAGCCTGTGCTTCAAGTGATTGATTTGAAGTTGATGCAGTCGCAGCAGCATAACAACATGGAGAGGTATAGGCTTGTGCTTTCAGATGGTTCTCATTTCCTGCAAGGGATGCTTGCTACCCCGAAGAACGAGTTGGTCCATTCTGGGCGATTGCAGAAGGGCTCTGTTGTTAAGCTGACTCAGTATGTCTGTAATGCTGTCCAGAGTCGCAAGGTTATGAAATCTGGGATTAGGGACACAGTTGTCTGTAGTTTCTTTCTTTCTCTCATAGCTGTGATTGTGTTTTCTCATGGTCTCAACTGTGGGTCATTTGATGATGTGGTTGTGTCATTCACTAAAAACAGGATTATCATCATTGTCGAGCTGGATATGATCCTTGACAGATGTGATCCAATCGGAGAACCTGTTGCAGCACCAAGAGCTGGACCTGCATCATCTTCCACTAATCAGTTTGGATCTACCACAGGGACCCAGAATTTAACCAGTAATTCACCTGCAGGTGGTCAGATTGCTCGACCAAATGTGACTCGGCCAGATCATTCACAAATCAATCGTACTTCCAATGACGTAAGATATGGTGCTGCAAATGCCCCTCCTCCATTGCCTAAAGCAGAGCCTAGAGCTTCCCCTACTTTACCTAAGTCAGAGCCATTTAATGGGTCCTATGGTGAACAGAACATGGGATTTCACAATCCTCCACTAGAAACTCCAATACCCCAGCAAAATGTCTATATTCGTCCGCCACAGCCTATGCATAGACAGCCTTCTCCATTCTACAATAACAGTGGACAAATTGGCAGAAATGAAGCTTTCCCAAGGATAATTCCAATAGCTGCATTGAATCCATACTCAAGCATGTGGACAATAAAGGCTAGAGTTACAGCAAAGGCAAGCCTCAGACAGTACAGCAATGCCAGAGGTGATGGCAAAGTATTTTCTTTTGATCTTCTTGATTCTGATGGTGGAGAAATTCGTGCAACTTGCTTTAATGCAGTGGCTGAACAGTTCTATCATCAAATTGAAATTGGTAAAGTATATCTGATTTCCAAGGGGAGTTTAAAGCCAGCTCAAAAAAATTTTAATCACCTTCCCAATGATCATGAACTGACTCTTGATTATACATCCATCATACAGCCATGTGATGATGAAAAGTCAATTCCAATGCATCTTTTTAAATTTCGTCCTATTAGTGATGTTGAAAGCATAGAAAATTCAAGTGTTATGGATGTGATTGGTGTCGTATTTTCTATCAGTCCTACCACTTCAATCATGAGAAAGAATGGTACTGAAACTCACAAGAGAGCCCTCCAGTTGAAGGACAGGTCTGGTTGCAGTGTTGAGTTAACCCTTTGGGGAGAGTTTTGTAATGCAGTAGGACAACAGTTGCAGAATACTTGTGACTCAGGTGCATTTCCAGTTTTGGCTGTGAAAGCTGCCAGGGTAAATGAATTCAATGGCAAGGCCCTAGGGACCTTATCCAATAGTCAGCTATTTATAGAGCCTGATCTTCCTGAGGCCTACAGGTTGAAAGAATGGTTTGACAAGGAAGGGAGGAATGCTCCAACTGTTTCTATTTCCAGAGAATCATTCAATGTTGGTAAGAATGATATGAGGAAGACTATATCTCAGATTAAAGATGAGAACTTAGGGACTTCAGAGAAGCCTGATTGGATTAGCATCTGTGCCAGTGTTTCATTCATTAAGGCCGACTCTTTCTGCTATACAGCCTGTCCCATCATGATAGGGGATAGGAAATGTAGCAAAAAACTGGGTCTTCTAGTTCATTTATGCCTTGCAGCAATTGTGGAGGCTCTGGCCATAGCTCTATGCATTGCCCAAACATTACAAGTGTACCTCGACAGTCAATGGGAGGAGGGGCCTTTGCAAATCGGGTATCTTCAGGGGTGGATGCATTCCAACCCTCAACCTCCACCTTTACGAGGGAGCATTAGCCATGGGGCTGCATCACCCCAATTCATTTTGCCTGAGTTTAGTTTTCCTAGTTTCTCTTTTGGTGAGTCTATGGAGCTCATGTCTGTCCCCAAAAAGAAGGTCTCTTGCAATAAAAGAGGAATAAGAAACGGACCAAAAGCTTTGAAACCTATCCCTGTGATAGTCCGGTTCAGGGATTGTGGCCGTGTGAAGCTTCCGCACTTCTTTTGTTGCAGTGGCGATAGAAATTATTCGGGCAAAAAATATGTATTATTAGATTTTGGTTATTACAAAGTTCTCCACGCCACAAAATTTTGTCTCAAGTTCCGCCGGTTGAAAACACGTGACAGCATCTGTATCGAGTGTCGTCGTGCTTCCGTATCTGTGGCAGCCACACGTCCCTCCAGCTCTCGGAGACATCAATCGCCGTCCGGCAACAATAACTCCGGTTTGTTCTTCCTGCCGAGACTTCTTCGCCTTTCCCAATTTCATTATTGA 2499 0.4378 MAANLTGGAIMTMYRDDFSCEDLQPVLQVIDLKLMQSQQHNNMERYRLVLSDGSHFLQGMLATPKNELVHSGRLQKGSVVKLTQYVCNAVQSRKVMKSGIRDTVVCSFFLSLIAVIVFSHGLNCGSFDDVVVSFTKNRIIIIVELDMILDRCDPIGEPVAAPRAGPASSSTNQFGSTTGTQNLTSNSPAGGQIARPNVTRPDHSQINRTSNDVRYGAANAPPPLPKAEPRASPTLPKSEPFNGSYGEQNMGFHNPPLETPIPQQNVYIRPPQPMHRQPSPFYNNSGQIGRNEAFPRIIPIAALNPYSSMWTIKARVTAKASLRQYSNARGDGKVFSFDLLDSDGGEIRATCFNAVAEQFYHQIEIGKVYLISKGSLKPAQKNFNHLPNDHELTLDYTSIIQPCDDEKSIPMHLFKFRPISDVESIENSSVMDVIGVVFSISPTTSIMRKNGTETHKRALQLKDRSGCSVELTLWGEFCNAVGQQLQNTCDSGAFPVLAVKAARVNEFNGKALGTLSNSQLFIEPDLPEAYRLKEWFDKEGRNAPTVSISRESFNVGKNDMRKTISQIKDENLGTSEKPDWISICASVSFIKADSFCYTACPIMIGDRKCSKKLGLLVHLCLAAIVEALAIALCIAQTLQVYLDSQWEEGPLQIGYLQGWMHSNPQPPPLRGSISHGAASPQFILPEFSFPSFSFGESMELMSVPKKKVSCNKRGIRNGPKALKPIPVIVRFRDCGRVKLPHFFCCSGDRNYSGKKYVLLDFGYYKVLHATKFCLKFRRLKTRDSICIECRRASVSVAATRPSSSRRHQSPSGNNNSGLFFLPRLLRLSQFHY 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1363 832 SUPERFAMILY Zn-binding ribosomal proteins 700 747 IPR011332 GO:0006412
Alju09g1363 832 CDD RPA1_DBD_A 299 401 - -
Alju09g1363 832 PANTHER REPLICATION FACTOR A 1, RFA1 310 605 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Alju09g1363 832 SUPERFAMILY Nucleic acid-binding proteins 1 96 IPR012340 -
Alju09g1363 832 CDD RPA1_DBD_B 430 537 - -
Alju09g1363 832 Gene3D - 548 615 IPR012340 -
Alju09g1363 832 Gene3D - 296 406 IPR012340 -
Alju09g1363 832 MobiDBLite consensus disorder prediction 159 238 - -
Alju09g1363 832 Pfam OB-fold nucleic acid binding domain 310 399 IPR004365 GO:0003676
Alju09g1363 832 NCBIfam replication factor-a protein 1 (rpa1) 287 613 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Alju09g1363 832 SUPERFAMILY Nucleic acid-binding proteins 561 613 IPR012340 -
Alju09g1363 832 CDD RPA1N 8 96 IPR007199 GO:0003677|GO:0005634|GO:0006260
Alju09g1363 832 MobiDBLite consensus disorder prediction 165 214 - -
Alju09g1363 832 FunFam Replication protein A subunit 408 547 - -
Alju09g1363 832 Gene3D - 3 161 IPR012340 -
Alju09g1363 832 FunFam Replication protein A subunit 296 405 - -
Alju09g1363 832 SUPERFAMILY Nucleic acid-binding proteins 297 407 IPR012340 -
Alju09g1363 832 FunFam Replication protein A subunit 4 97 - -
Alju09g1363 832 Pfam Replication factor-A protein 1, N-terminal domain 5 96 IPR007199 GO:0003677|GO:0005634|GO:0006260
Alju09g1363 832 Pfam Ribosomal L32p protein family 703 756 IPR002677 GO:0003735|GO:0006412|GO:0015934
Alju09g1363 832 Pfam Replication protein A OB domain 419 522 IPR031657 -
Alju09g1363 832 SUPERFAMILY Nucleic acid-binding proteins 414 543 IPR012340 -
Alju09g1363 832 Gene3D - 408 547 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1363 Alju-ChrAlju09 37417561 37425970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1363 1 613 Core DNA Replication Machinery Family AT5G45400 46.224 0.0 570
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g1363 09 37417561 37425970 Alju09g1363 09 37417561 37425970 ECH