Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1315 ATGTATGGGGATTGTCAAGTGATGTCAAGCATGGGAGGTAACGTAGTAGTGAACTCAGAAACGCTCTTTACTTCGTCAATCCAAAACTCCAACTTTAACTTCATACCCACCATGCCTTTTCATCAACCTTTCCAACCTCCTCCCATGAAAGAAGAAGAGGGGACAATGATGATGATGAGAGGGAAGGAAGAGATAATGGAGAGCGGGTCAGGAAGCGAACAAGCTGATCAAGAAAAGTCTGGGAACGAACAAGACAGTGAACAGCCAGCCAACAAGAAGAAACGTTACCACAGGCACACTGCTCGTCAGATCCAAGAAATGGAAGCTTTGTTCAAGGAATGTCCACACCCAGACGACAAGCAAAGGATGAAACTAAGCCAAGAGCTGGGTTTGAAGCCACGCCAAGTCAAGTTCTGGTTTCAAAATCGTCGAACTCAGATGAAGGCTCAACAAGATAGAGCTGATAATGTGATACTGAGAGCAGAAAATGAGAATCTGAAGAATGATAACTATCGTCTACAAGCAGCATTGCGTAATGTGATGTGTCCTAATTGTGGTGGTCCTGCCTTGATGGGTTCTGATCTCGTCATGGACGACCATCAGCTTCGTCTTGAAAATGCTCGCCTCAGAGAAGAGCTAGAACGAGTGTGTTGTCTCACATCAAGATACACAGGCCGTGCAATGCAAACAATGGCATCACCACCAACACCTGCTCTAATGGCTCCTTCATTGGATTTGGACATGAACATATACTCAAGGCACTTTACCGATCCCGTCGCCTCTTGTACATCGGAGATGATTCCGGTCCCCATGTTGCCTCCTTCGGATCATACTTCACCATTCTCAGACGGTGGCGGCGGCCTGTTATTGATGGAAGAAGACAAGTCTCTGGCTTTGGAGCTCGCCGTGTCGTCCATGGATGAACTAGTCAAGATGTGTCAGGCAAACGAGCCTCTTTGGATTAGAAACAATGAGAATGAGAGGGAAATTCTCAATTTTGAGGAGCATGCTAGGCTTTTTCATTGGCCTCTCAACCTCAAGAACCATTCCACTGAACTTAGAAGAGAAGCTAGCCGTGACACTGCTGTGGTTATAATGAATAGTGTCACTCTTGTTGACGCCTTCCTTGATGCTATTAAGTGGATGGAATTGTTCCCCACCATTGTTTCAAGGGCAAAAACTGTACAAGTTATATCGTCTGGTGCTTCTGGTCATGCAAGTGGGTCACTTCAACTGATGTACGCAGAATTACAGGTGATTTCTCCGTTGGTTCCCACTCGTGAGACTCATTTTCTTCGTTACTGCCAGCAAAACGCGGAGGAGGGGACATGGGCAATTGTTGATTTTCCTCTTGATAGCTTCCACGAAAGTTTTCACCATTCTTATCCTAGATATTGCAGGCGACCCTCTGGCTGTATTATTCAAGACATGCCAAATGGCTACTCAAGGGTAACGTGGGTGGAGCATGCAGAGGTGGAAGAGAAACCAGTGCATCAGATATTCAGTAACTATGTGTACAGTGGAATGGCCTATGGAGCACAGAGTTGGTTAGGGGTTTTGCAGAGACAATGTGAGAGGAACGCCAGCCTCATGGCTAGGAATATTTCAGACCTTGGAGTGATACCGTCGCCGGAAGCCAGAAAGAACTTAATGAAACTGGCCCAGAGAATGATAAGAACGTTCAGCCTGAACATGAGCACCTCTAGTGGCCAATCATGGACGGCGTTATCAGATTCTGCTGAAGATACTGTTAGAATTACAACAAGGAAGATCACGAACCCAGGCCAACCTAACGGGGTCATACTCACTGCAGTCTCCACCACCTGGCTTCCTTATCCTCATTCCAAGGTCTTTGACCTCCTCAAGGACGAACATCGCAGATCTCAGTTGGATTTTCTCTCCAATGGCAACTCTTTGAATGAAGTGGCTCATATTGCAAATGGCTCACACCCTGGAAATTGCATCTCCCTTTTACGCATTAACGTGGCTAGCAACTCATCTCAGAACGTAGAGCTAGTGGTGCAAGAGAGTTGCACCGATCAGTCGGGGAGTCTGGTGGTGTACGCCACCATCGACGTCGAGTCCATCCAGCTCGCCATGTCCGGCGAGGACCCTTCCTCCATAGCACTTCTTCCACAAGGCTTCGTCATGGTTCCGGCCACAAATACAACCTCCAATTCAACTGAATCTGCTGCTGCAGCCACAGCCGGAGGAGAAGGAGCACCACCGCCACCGTCATCTTCTTCTAGTCTGAAGCAAGCTTGTCTTCTCACAGTGGGCCTCCAAGTTCTGGCCAGCACCATCCCTTCTGCGAAACTCAACCTCTCCAGCGTCACCGCCATTAACAACCATCTCTGCAACACTCTCCACCAAATCGAAGCCGCTCTTTGCACCGACGATGGCACTTTCGTCGTCGAACCCGCCACTACTTCTACCCCTAAGCAGTAG 2448 0.4804 MYGDCQVMSSMGGNVVVNSETLFTSSIQNSNFNFIPTMPFHQPFQPPPMKEEEGTMMMMRGKEEIMESGSGSEQADQEKSGNEQDSEQPANKKKRYHRHTARQIQEMEALFKECPHPDDKQRMKLSQELGLKPRQVKFWFQNRRTQMKAQQDRADNVILRAENENLKNDNYRLQAALRNVMCPNCGGPALMGSDLVMDDHQLRLENARLREELERVCCLTSRYTGRAMQTMASPPTPALMAPSLDLDMNIYSRHFTDPVASCTSEMIPVPMLPPSDHTSPFSDGGGGLLLMEEDKSLALELAVSSMDELVKMCQANEPLWIRNNENEREILNFEEHARLFHWPLNLKNHSTELRREASRDTAVVIMNSVTLVDAFLDAIKWMELFPTIVSRAKTVQVISSGASGHASGSLQLMYAELQVISPLVPTRETHFLRYCQQNAEEGTWAIVDFPLDSFHESFHHSYPRYCRRPSGCIIQDMPNGYSRVTWVEHAEVEEKPVHQIFSNYVYSGMAYGAQSWLGVLQRQCERNASLMARNISDLGVIPSPEARKNLMKLAQRMIRTFSLNMSTSSGQSWTALSDSAEDTVRITTRKITNPGQPNGVILTAVSTTWLPYPHSKVFDLLKDEHRRSQLDFLSNGNSLNEVAHIANGSHPGNCISLLRINVASNSSQNVELVVQESCTDQSGSLVVYATIDVESIQLAMSGEDPSSIALLPQGFVMVPATNTTSNSTESAAAATAGGEGAPPPPSSSSSLKQACLLTVGLQVLASTIPSAKLNLSSVTAINNHLCNTLHQIEAALCTDDGTFVVEPATTSTPKQ 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1315 815 Gene3D - 333 524 IPR023393 -
Alju09g1315 815 Pfam Homeodomain 93 148 IPR001356 GO:0003677
Alju09g1315 815 Coils Coil 149 169 - -
Alju09g1315 815 ProSiteProfiles START domain profile. 291 529 IPR002913 GO:0008289
Alju09g1315 815 ProSitePatterns 'Homeobox' domain signature. 125 148 IPR017970 GO:0000981|GO:0006355
Alju09g1315 815 MobiDBLite consensus disorder prediction 721 749 - -
Alju09g1315 815 MobiDBLite consensus disorder prediction 78 92 - -
Alju09g1315 815 SMART START_1 300 526 IPR002913 GO:0008289
Alju09g1315 815 Gene3D - 77 161 - -
Alju09g1315 815 SUPERFAMILY Homeodomain-like 80 151 IPR009057 -
Alju09g1315 815 ProSiteProfiles 'Homeobox' domain profile. 90 150 IPR001356 GO:0003677
Alju09g1315 815 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 88 796 IPR042160 -
Alju09g1315 815 SMART HOX_1 91 154 IPR001356 GO:0003677
Alju09g1315 815 MobiDBLite consensus disorder prediction 65 100 - -
Alju09g1315 815 SUPERFAMILY Bet v1-like 562 793 - -
Alju09g1315 815 FunFam Homeobox-leucine zipper protein HDG1 80 166 - -
Alju09g1315 815 SUPERFAMILY Bet v1-like 292 527 - -
Alju09g1315 815 CDD homeodomain 93 151 IPR001356 GO:0003677
Alju09g1315 815 Pfam START domain 301 526 IPR002913 GO:0008289
Alju09g1315 815 CDD START_ArGLABRA2_like 295 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1315 Alju-ChrAlju09 36905050 36910584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1315 8 796 Homeobox Transcription Factor Family AT5G46880 57.346 0.0 875
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Alju09g1315 START 2.6e-40 CL0209