LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju09g1299	ATGGATGGAGAGAACAAGAGCAGTGGAGATGGCGGGGATGTCCAGATGGCGGTTCCGGCACCGGCTCCCATGTCTAATGCGAACGCTCCACCACCGTTTCTTAGTAAGACGTATGACATGGTGGATGACCCGGCCTCTGATGCGATCGTGTCTTGGAGCCCAACCAATAACAGCTTCGTGGTTTGGAACCCACCAGAGTTTGCCAGAGATCTCTTGCCCAAGTACTTCAAGCACAATAATTTCTCCAGCTTTGTGAGGCAGTTGAACACTTATGGTTTTCGGAAGGTGGATCCAGATCGGTGGGAATTTGCAAATGAGGGCTTTTTAAGGGGTCAGAAGCACTTGCTTAAGAGTATTACTCGACGAAAACCAGCCCATGGCCATAGTAATCAACAAACACAGCACTCACAGGGACATAATTCATCAGTAGGGGCATGTGTAGAAGTTGGGAAGTTTGGACTTGAAGAAGAGGTTGAGAGACTTAAAAGAGATAAGAATGTGCTCATGCAGGAGCTTGTGAGGTTGAGGCAGCAGCAACAGTCCACTGATAACCAGCTGCAGACAATGGTTCAGCGCCTTCAGGGAATGGAACAACGACAACAGCAAATGATGTCATTCCTTGCCAAGGCTGTCCAGAGCCCTGGCTTCTTTGCTCAGTTTGTACAACAGCAGAATGAGAGCAATAGACGCATAACTGAAGCCAACAAAAAACGGCGGCTTAAGCAGGAAGGTATTGCTGAAACAGAATGTACTACTGCTTCTGATGGACAAATTATCAAGTATCAGCCTCTGATGAATGAAGCAGCAAAAGCAATGCTAAGGCAGATAATGAAATTGGATACTTCAAGGGTGGAATCTTTTAATAACAACCTTGATAATTACTTGATTGGGGATGGTTCATCATCATCCAGTGCAATGGACAGTAGTAGCTCTTCAAGCTGGACTTCTGGAGTTACACTTCAAGAGGTCCCACCAACCTCAGTGCAGTCTTCTCACATTCCAGCTGCGTCAGGAACTTGCGGGCCCTCAGCTGATAAATCCAAAATCCCATCTACAAAAGCTGCACCTGCTGGCTCTGCTCCTCAGGCAGACGTCATAATGCCTGACCTTTCGCCCATTCCAGAGATGGAAACAGAAAGTATTCCTGATTTTCCTGAAGGAAATTATGTGAGACCTGCGATGGACAACATGGATCCTACGTCATTGGGAGTGAATGGGTCATTGCCCACTGATGTTGGTGGTTTTTCTCCTGATGCAGACATTGATGATTTGTTACGCAATCCTTCCTTTTGGGATGATTTTCTTCTGCAAAGTCCAATGCCTGAGGATATCGAGATTAATGCTGCTGAAGCAGTGTCCAATGAGGTGCAGCCAATGGAAGATGGGTGGGACAAAGGTGAGCGCGTGAGCCAACTTACAGAGCAGATGGGTCTTCTTTCTTCTGATCCAAGAGCAGGTTGA	1461	0.4695	MDGENKSSGDGGDVQMAVPAPAPMSNANAPPPFLSKTYDMVDDPASDAIVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSITRRKPAHGHSNQQTQHSQGHNSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNESNRRITEANKKRRLKQEGIAETECTTASDGQIIKYQPLMNEAAKAMLRQIMKLDTSRVESFNNNLDNYLIGDGSSSSSAMDSSSSSSWTSGVTLQEVPPTSVQSSHIPAASGTCGPSADKSKIPSTKAAPAGSAPQADVIMPDLSPIPEMETESIPDFPEGNYVRPAMDNMDPTSLGVNGSLPTDVGGFSPDADIDDLLRNPSFWDDFLLQSPMPEDIEINAAEAVSNEVQPMEDGWDKGERVSQLTEQMGLLSSDPRAG	486

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju09g1299	486	MobiDBLite	consensus disorder prediction	455	486	-	-
	Alju09g1299	486	ProSitePatterns	HSF-type DNA-binding domain signature.	72	96	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Alju09g1299	486	SUPERFAMILY	"Winged helix" DNA-binding domain	28	122	IPR036390	-
	Alju09g1299	486	FunFam	Heat shock transcription factor 1	26	123	-	-
	Alju09g1299	486	Coils	Coil	151	178	-	-
	Alju09g1299	486	MobiDBLite	consensus disorder prediction	125	141	-	-
	Alju09g1299	486	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	21	310	IPR027725	-
	Alju09g1299	486	MobiDBLite	consensus disorder prediction	1	31	-	-
	Alju09g1299	486	Pfam	HSF-type DNA-binding	33	122	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Alju09g1299	486	PRINTS	Heat shock factor (HSF) domain signature	84	96	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Alju09g1299	486	PRINTS	Heat shock factor (HSF) domain signature	33	56	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Alju09g1299	486	PRINTS	Heat shock factor (HSF) domain signature	71	83	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Alju09g1299	486	SMART	hsfneu3	29	122	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Alju09g1299	486	MobiDBLite	consensus disorder prediction	121	141	-	-
	Alju09g1299	486	Gene3D	-	25	123	IPR036388	-
	Alju09g1299	486	MobiDBLite	consensus disorder prediction	300	337	-	-
	Alju09g1299	486	MobiDBLite	consensus disorder prediction	300	364	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju09g1299	Alju-ChrAlju09	36665493	36669130	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju09g1299	1	480	HSF	AT1G32330	53.800	8.60e-172	491

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Alju09g1299		HSF_DNA-bind	3.1e-33	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Alju09g1299	09	36665493	36669130	Alju09g1299	09	36665493	36669130	ECH