Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1297 ATGGCACAATTTCCAACCGCGGAAACTCCCTTCAAGAACCACAAACCTTGCGCTCGCGGTTCTCAGCCGAGGCGGAGGAATCGAGGTGGAAAGCTCAAGACCCTGTTCGTTCCGAAATCTGAATTGGATTCTTCTAATTCTGAGATTGATCGTTCGCTTGACGAATTAAGCATTCGCGAGGACTTTGATGTCTCGCGAGAATTGGACCTGGAGAACAAGAACGGTTCGGAGCTGAAGAATGAAGTGGAATATAAGGGAGAAGAGAGTCATGCGGATGATTCAGACAAGGAAGGGAATAGTGTTTATCGTAGACTGGATGAGCAGATGATGGATGTAGGGGAGCTGGAATTGTCAGAGGAACAGCTGAGTGTTAATGATCAATTGCAAGAAGATGAGTTACTTGCTTTGGAGGCAATTTATGGGGAAAATGTCCTCAACCTCGAGAGATGGAAAGGTCTCCGTTGTTTTCAGATACACATACACATTGAAGTTCTAGATGAAATTGGCATCACAGCTAAGCTGAATTCTTCTAATGAACACAAGACTGCAAGCAGCAATGCAGATGACTTCACATACTCGCTTAAAGTCAAATATCTTCCACCTATTATTTTGACATTTTTATTGCCAAAGTCATACCCAAGCCGTCAACCGCCTCATTTTACAATTTCTGTTAAGTGGTTGGACTCCACAAGAATTTCTAGTTTATGCTCCATGTTAGATTCAATGTGGACCGAGCAGCAAGGGCAGGAAGTTATTTACCAGTGGGTAGAATGGTTACATGGTTTTTCTCTATCTCATCTTGGATTTGATGAAGTGATAACTCTTGGTCCTTATGGCATGAAACATGTTGGAGATGAGCGTGCAGTCTCGGGAGCTGTGTCCCTAGATTTTGATGTTCCTTCATTACGAAGTTACAACAATGAGAGACATCATGAGAACTTCCTTAAAGAAATGCATGAATGTGGCATTTGCTTCAATGTATATGTATATGCAGGTACAGAGTTTGCTCAGTTACCATGTCAGCATTTTTTCTGCTTAAAATGCTTGCAGACCTTTGCTCAGATGCATGTAAAAGAAGGAACCCTCAGTAATCTTCAATGTCCCGGTTCAAAATGTTCTGTTATGATTCCACCTGCTCTATTAAAACGTTTGCTTGATGATAAAGAGTATGAGCGCTGGGAATCCTTAATGTTGGAGAAAACACTTGAATCAATGTCTGATGTTGCTTATTGCCCAAGATGTGAAACACCTTGTATAGAAGATGAAGAACAGCATGCTCAATGCTCTAACTGCTTCTTTAGCTTTTGTACCCTTTGCAGGGAGCGACGCCATGTTGGCATGCAATGCATGACCCTAGAGATGAAGCTTCAAATTTTGCAAGAGCGCCAGAATTCATCTCAGTTAAAGGGAGCTCAGAGGCTGAAGGAACGTGAAATGATAAATGAAATGCTCAGCATCAAAGAAATTCGTCGTGATTCTAAGCTGTGCCCTTCTTGTCAAATGCCTATTTCCCGAACTGAAGGTTGCAACAAAATGGTGTGTGGTAATTGTGGCCAATATTTCTGTTACCGCTGCAACAAAGCACTTGCTGAATCTGATCCTTACGGACATTTCAGGGATGGGTCCTGTGAATTGTTCCCACAAGAAATGGTGGAGGCTTGGCAAGAACGCATAAACCACCGTCAGGTGGTGGCACAGATGCAAGCAGAACTCCTTAATGAACGAGGCCAACGTTGTCCTAATTGCCGTCAATTTAATGCAAAGGTTGGAAACAATAACCACATGTTTTGCTGGGCATGCCAATGCCATTATTGCTACTCTTGCAAGCAGATTGTTAGGCGCAGCGCGCAGCATTATGGACCCAAGGGTTGCAAACAGCACTCGGATGATTAG 1893 0.4311 MAQFPTAETPFKNHKPCARGSQPRRRNRGGKLKTLFVPKSELDSSNSEIDRSLDELSIREDFDVSRELDLENKNGSELKNEVEYKGEESHADDSDKEGNSVYRRLDEQMMDVGELELSEEQLSVNDQLQEDELLALEAIYGENVLNLERWKGLRCFQIHIHIEVLDEIGITAKLNSSNEHKTASSNADDFTYSLKVKYLPPIILTFLLPKSYPSRQPPHFTISVKWLDSTRISSLCSMLDSMWTEQQGQEVIYQWVEWLHGFSLSHLGFDEVITLGPYGMKHVGDERAVSGAVSLDFDVPSLRSYNNERHHENFLKEMHECGICFNVYVYAGTEFAQLPCQHFFCLKCLQTFAQMHVKEGTLSNLQCPGSKCSVMIPPALLKRLLDDKEYERWESLMLEKTLESMSDVAYCPRCETPCIEDEEQHAQCSNCFFSFCTLCRERRHVGMQCMTLEMKLQILQERQNSSQLKGAQRLKEREMINEMLSIKEIRRDSKLCPSCQMPISRTEGCNKMVCGNCGQYFCYRCNKALAESDPYGHFRDGSCELFPQEMVEAWQERINHRQVVAQMQAELLNERGQRCPNCRQFNAKVGNNNHMFCWACQCHYCYSCKQIVRRSAQHYGPKGCKQHSDD 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1297 630 SMART ibrneu5 478 543 IPR002867 GO:0008270
Alju09g1297 630 SMART ibrneu5 391 449 IPR002867 GO:0008270
Alju09g1297 630 SMART ring_2 579 608 IPR001841 -
Alju09g1297 630 SMART ring_2 496 525 IPR001841 -
Alju09g1297 630 SMART ring_2 321 370 IPR001841 -
Alju09g1297 630 CDD Rcat_RBR_RNF14 481 546 IPR047548 GO:0008270
Alju09g1297 630 ProSiteProfiles RWD domain profile. 131 266 IPR006575 GO:0005515
Alju09g1297 630 Gene3D Ubiquitin Conjugating Enzyme 117 267 IPR016135 -
Alju09g1297 630 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 407 IPR013083 -
Alju09g1297 630 SUPERFAMILY RING/U-box 482 538 - -
Alju09g1297 630 ProSiteProfiles Zinc finger RING-type profile. 321 368 IPR001841 -
Alju09g1297 630 Gene3D - 466 562 - -
Alju09g1297 630 SUPERFAMILY UBC-like 123 262 IPR016135 -
Alju09g1297 630 SUPERFAMILY RING/U-box 567 627 - -
Alju09g1297 630 CDD BRcat_RBR_RNF14 402 453 - -
Alju09g1297 630 SMART RWD2001b 131 266 IPR006575 GO:0005515
Alju09g1297 630 ProSitePatterns Zinc finger RING-type signature. 340 349 IPR017907 -
Alju09g1297 630 MobiDBLite consensus disorder prediction 73 99 - -
Alju09g1297 630 FunFam RBR-type E3 ubiquitin transferase 464 573 - -
Alju09g1297 630 ProSiteProfiles TRIAD supradomain profile. 317 548 IPR044066 -
Alju09g1297 630 MobiDBLite consensus disorder prediction 18 32 - -
Alju09g1297 630 Pfam IBR domain, a half RING-finger domain 486 528 IPR002867 GO:0008270
Alju09g1297 630 Pfam IBR domain, a half RING-finger domain 391 449 IPR002867 GO:0008270
Alju09g1297 630 SUPERFAMILY RING/U-box 316 405 - -
Alju09g1297 630 SUPERFAMILY RING/U-box 391 454 - -
Alju09g1297 630 FunFam RBR-type E3 ubiquitin transferase 316 402 - -
Alju09g1297 630 CDD Rcat_RBR 577 610 - -
Alju09g1297 630 MobiDBLite consensus disorder prediction 1 50 - -
Alju09g1297 630 Pfam RWD domain 127 260 IPR006575 GO:0005515
Alju09g1297 630 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 132 538 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1297 Alju-ChrAlju09 36645104 36649989 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1297 285 553 C3H Transcription Factor Family AT2G31770 25.993 4.62e-17 82.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g1297 09 36645104 36649989 Alju09g1297 09 36645104 36649989 ECH