Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju09g1295 | ATGTTAGATTCAATATGGACGGAGCAGCAAGGGCAGGAAGTTATATACCATTGGGTAGAATGGTTACATGCGTTTTCTCTTTCTCATCTGGGATTTGATAAAGAGATTACTCTTAGTCCTGATGGCATGAAATATGTTGGAGATGAGCGTGCAGTCTCAGGAACTGTGTCCCTAGATTTAGATATTCCTTCATTACAAAGTTACAACAATGAGAGACATCATGAGAACTTCCTTAGAGGAATGCATGAATGTTGCATTTGCTTCAATGTATTTGGAGGTATGGAGTTTGCTGAGTTGCCATGTCAGCATTTTTTCTGCCTAAAATGCTTGCAGACCTTTGCTCAGATGCATGTAAAAGAAGGCACCATCATTAATCTTCAATGTCCCAATCCAAAATGTGCTGTTATGATTCCACCTGCTCTATTGAAACTCTTTCTTGATGATAAAGAGTATGAGCGCTGGGAGTCTTTCATGTTGGAGAAAACACTTGAATCAATGTCTGATGTTTCTTATTGCCCAAGATGTGGAACACCTTGTATAAAAGATGAAGAACAGCATGCTCAATGCTCTAAATGCTTCTTTAGCTTTTGTACACTTTGCAGGGAGCGGCGCCATGTTGGCATGGAATGCACGACCCTAGACATGAAGCTTCAAAATTTGCAAGAGCGCCAGAATTCATCTCAACTAGAGGAAGCTGAGAAGATGACGATCCATGACATCATTAATGACATTATCAGCCTCAAACTAATTCGTAGTGATTCTAAGCAGTGCCCTTCTTGTCACATGGCTATTTACCGAACTGAAGGTTGCAATATAATGGTGTGTCGTAATTGTGGCCAACATTTCTGTTATCGCTGTGGCAAAGCAATTGAGCGTGGACATTTCAGGGATGGGCCCTGTAAAATATTGACACGAGAAATGCTAAAGGCTTCGCAAGAACGCTTAAACCACCGTCAGGTGGAAGGAGAGATTCAACGAGGCCAACAATGTCCTAATTGTCGTCGATTTAATGCAAAGGTTGGAAACCTTAACTATATGTTTTGCCGGGCATGCCAAAGACATTATTGCTACTCTTGCAAGCAGATTGTTGAGAGTAGCTCGCAGCATTATGGACGCAAGGGCTGCAAAAGGCACTCTAATGATTAG | 1146 | 0.4162 | MLDSIWTEQQGQEVIYHWVEWLHAFSLSHLGFDKEITLSPDGMKYVGDERAVSGTVSLDLDIPSLQSYNNERHHENFLRGMHECCICFNVFGGMEFAELPCQHFFCLKCLQTFAQMHVKEGTIINLQCPNPKCAVMIPPALLKLFLDDKEYERWESFMLEKTLESMSDVSYCPRCGTPCIKDEEQHAQCSKCFFSFCTLCRERRHVGMECTTLDMKLQNLQERQNSSQLEEAEKMTIHDIINDIISLKLIRSDSKQCPSCHMAIYRTEGCNIMVCRNCGQHFCYRCGKAIERGHFRDGPCKILTREMLKASQERLNHRQVEGEIQRGQQCPNCRRFNAKVGNLNYMFCRACQRHYCYSCKQIVESSSQHYGRKGCKRHSND | 381 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju09g1295 | 381 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 323 | 370 | IPR031127 | GO:0004842|GO:0016567 | |
| Alju09g1295 | 381 | ProSitePatterns | Zinc finger RING-type signature. | 101 | 110 | IPR017907 | - | |
| Alju09g1295 | 381 | Gene3D | - | 234 | 297 | - | - | |
| Alju09g1295 | 381 | Gene3D | - | 298 | 381 | - | - | |
| Alju09g1295 | 381 | SMART | ring_2 | 257 | 333 | IPR001841 | - | |
| Alju09g1295 | 381 | SMART | ring_2 | 84 | 175 | IPR001841 | - | |
| Alju09g1295 | 381 | SMART | ibrneu5 | 313 | 375 | IPR002867 | GO:0008270 | |
| Alju09g1295 | 381 | SMART | ibrneu5 | 152 | 210 | IPR002867 | GO:0008270 | |
| Alju09g1295 | 381 | SMART | ibrneu5 | 239 | 300 | IPR002867 | GO:0008270 | |
| Alju09g1295 | 381 | ProSiteProfiles | TRIAD supradomain profile. | 80 | 304 | IPR044066 | - | |
| Alju09g1295 | 381 | SUPERFAMILY | RING/U-box | 325 | 370 | - | - | |
| Alju09g1295 | 381 | SUPERFAMILY | RING/U-box | 152 | 214 | - | - | |
| Alju09g1295 | 381 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 80 | 167 | IPR013083 | - | |
| Alju09g1295 | 381 | ProSiteProfiles | Zinc finger RING-type profile. | 84 | 132 | IPR001841 | - | |
| Alju09g1295 | 381 | SUPERFAMILY | RING/U-box | 80 | 166 | - | - | |
| Alju09g1295 | 381 | CDD | BRcat_RBR_RNF14 | 163 | 214 | - | - | |
| Alju09g1295 | 381 | FunFam | RBR-type E3 ubiquitin transferase | 79 | 163 | - | - | |
| Alju09g1295 | 381 | SUPERFAMILY | RING/U-box | 247 | 295 | - | - | |
| Alju09g1295 | 381 | Pfam | IBR domain, a half RING-finger domain | 152 | 210 | IPR002867 | GO:0008270 | |
| Alju09g1295 | 381 | Pfam | IBR domain, a half RING-finger domain | 252 | 291 | IPR002867 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju09g1295 | Alju-ChrAlju09 | 36610495 | 36613627 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju09g1295 | 83 | 338 | C3H Transcription Factor Family | AT2G31760 | 22.963 | 5.29e-19 | 86.7 |