Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1293 ATGAGGGATGTACCGGAGCCGGAATTGTCAGAGGAACAGCTGAGTATAAATGATCAATTGCAAGAAGATGAGTTACTTGCTTTGGAGGCAATTTATGGAGAAAATGTCTTCAGCCTTGAGAGATGGAAAGGTCTCCGTTGTTTTCAGACGGAGCAGCAACGGCAAGAAGTTACATACCAGTGGGTAGAATGGTTACATGGTTTTTCTCTTTCTCGTCTGGGATTTGATGAAGAGATTACTCTTAGTCCTGATGGCATGAAACATTTTGGAGATGAGCGTGCAGTCTCAGGAGCTGTGTCTCTAGATTTGGATATTCCTTCGTTACGAAGTTACAACAATGATAGACATCATGAGAACTTCCTAAAAGAAATGCATGAATGTTGCATTTGCTTCAATGTTTATGGAGGTACGCAGTTTGCTCAGCTATCATGTCAGCATTTTTTCTGCTTAAAATGCTTGCACAAATTTGCTCAGATCCATGTAAAAGAAGGCACCATCGGCAACCTTCAATGTCCCAATCCAAAATGTGCTGTTATGATTCCACCTGCTCTGTTAAATCACTTGCTCAATGATAATGAGTATGAACGCTGGGAATCCTTGATGTTGGAGAACACACTTGCATCAATGTCTGATGTTGCTTATTGCCCAAGATGTGAAACACCTTGTATCGAAGATGAAGAACGACATGCTCAATGCTCTAAATGCTTTTGCAGCTTTTGTACCCTTTGCAGGGAGCGACGCCATGTTGGCAGAGCATGCAAGACCCTAGACATGAAGCTTCAAAATTTTCAAGAGCGCCAAAATTCATCTCAAATAGAGGAAGATCAGAAGCTGAGGGAACGTGAAAAGATTAATGAAATTATCAGCCTTAAAGAAGTTCTTTGTAATTTTAAGCGGTGCCCTTCTTGTAGAATGGCTATTTACCGAAATGAAGGTTGCAATAAAGTGTTCTACAGTAATTGTGGCCACGTTTTCTGTTACCGCTGCAACAAAGAAATTGATAATAGCTATGGACATTTCAGGAATGGGTCCTGTGAATTGTTCCCAGAAGAAGAGTTGGAGGCTTTGGAAGAACTCATAAACCGCCGTCAGGTGGAAGGACAGATGGCGAGATTCCTTGTTGGGCATTTTCCAGTTGGCCACCGATGTCCTAACTGTCGTCAATTTAATGCAAAGGTGTTTCCATCGCCTGCTTACTTTTGGTGGGAACATGAAAGGAGCTGACATCCTTTAAGGCTTCTTGAAGCAAATCCCGCTGAGCTTTCATTCTACTTATGGGAAATATCAGGAACAACTTCCTTTTCCTCCTTCGCTTTTGGCCAAGACAATCAAACATCTGCTTCTCATGCATTGGTTGAACCGATTGTTAAGCATCCAGGAATGCCATTGTAGATATCAGCATCTGACATCATTCCGGATGAGGAAACTTTGGAGATCATATGCATTAAAAAGAGCTCTCTAGTCTACCTTAAACAATTCCAGGGATCATCATCAAAGAATACCATTCAAGAAGACACTGTCCTTAGAGACTTGGTTTTCGAAGTTAGAGGTGTCAATATTGAATCAAAAGTAGTAAATGGTGGGTAA 1587 0.414 MRDVPEPELSEEQLSINDQLQEDELLALEAIYGENVFSLERWKGLRCFQTEQQRQEVTYQWVEWLHGFSLSRLGFDEEITLSPDGMKHFGDERAVSGAVSLDLDIPSLRSYNNDRHHENFLKEMHECCICFNVYGGTQFAQLSCQHFFCLKCLHKFAQIHVKEGTIGNLQCPNPKCAVMIPPALLNHLLNDNEYERWESLMLENTLASMSDVAYCPRCETPCIEDEERHAQCSKCFCSFCTLCRERRHVGRACKTLDMKLQNFQERQNSSQIEEDQKLREREKINEIISLKEVLCNFKRCPSCRMAIYRNEGCNKVFYSNCGHVFCYRCNKEIDNSYGHFRNGSCELFPEEELEALEELINRRQVEGQMARFLVGHFPVGHRCPNCRQFNAKVFPSPAYFWWEHERSXHPLRLLEANPAELSFYLWEISGTTSFSSFAFGQDNQTSASHALVEPIVKHPGMPLXISASDIIPDEETLEIICIKKSSLVYLKQFQGSSSKNTIQEDTVLRDLVFEVRGVNIESKVVNGG 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1293 528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 210 IPR013083 -
Alju09g1293 528 CDD BRcat_RBR_RNF14 206 257 - -
Alju09g1293 528 FunFam RBR-type E3 ubiquitin transferase 122 206 - -
Alju09g1293 528 SUPERFAMILY RING/U-box 122 206 - -
Alju09g1293 528 SUPERFAMILY RING/U-box 195 257 - -
Alju09g1293 528 ProSiteProfiles TRIAD supradomain profile. 123 350 IPR044066 -
Alju09g1293 528 SMART ibrneu5 282 345 IPR002867 GO:0008270
Alju09g1293 528 SMART ibrneu5 195 253 IPR002867 GO:0008270
Alju09g1293 528 ProSiteProfiles Zinc finger RING-type profile. 127 175 IPR001841 -
Alju09g1293 528 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 97 340 IPR031127 GO:0004842|GO:0016567
Alju09g1293 528 SUPERFAMILY RING/U-box 289 337 - -
Alju09g1293 528 ProSitePatterns Zinc finger RING-type signature. 144 153 IPR017907 -
Alju09g1293 528 Gene3D - 270 377 - -
Alju09g1293 528 Pfam IBR domain, a half RING-finger domain 195 253 IPR002867 GO:0008270
Alju09g1293 528 SMART ring_2 127 174 IPR001841 -
Alju09g1293 528 SMART ring_2 300 386 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1293 Alju-ChrAlju09 36593465 36601873 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1293 126 372 C3H Transcription Factor Family AT2G31760 25.097 1.19e-16 80.9