Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju09g1292 | ATGAAGGAGACGAAGCTCGTGCTGGAGGCTTCGGTTAGGGAAGCTCCTACTGAGCTCGTGGTGGAACCCAGTGATCTACGGCTTTGGGTGTCAATGGCAGCTGAAGCTTCCTTCAAGCACCACAAACCCAGCGATTCTCAGACGAAGTGGAGGAATCAAGATGGAAAGCTCGATTTCCGGTACGTCGCGAAATCTGAATTGGATTCTTCTAATTCTGAGGCTGATCGCTCGCTTGAAGAATTAAGCATTCGCGAGGAGGTTGATAACGCGCGAGCATTGGACCCGGGGAACAAGCACGATTCGGAGCTGAAGAATGAAGTAGGAAATAAGAGGGAAGAGAATCATGTGGATGATTCAAGCAATGAAGTCAATAGTGTTTACAGTAGACTGGATAGGCTAATGAGGGATGCACGGGAGCCGGAATTGTCAGAGGAACAGCTGAGTATAAATGATCAATTGCAAGAAGATGAGTTACTTGCTTTGGAGTCAATTTATGGAGAACATGTCTTCATCCTCGAGAGATGGAAAGGTCTCCATTGTTTTCAGATACAAATACACGTTGAAGTTTTAGATGAAATTGACATCACAGCTAAGCTGAATTCTTCTAACCAAGATAATACTTTAAGCAGCATTGCAGATGACTTCACATACTCACTTAAAGTCAAATATCTTCCACCTATTATTTTGACATGTTTATTGCCAAAGTCATACCCAAGCCATCAACCCCCGTATTTTATGATTTTTGTTAAATGGTTGGACTCCACAAGAATTTCTAGTCTATGCTCCATGTTAGATTCAATATGGACCGAGCAGCAAGGGCAGGAAGTTACATACCAGTGGGTAGAATGGTTACATGGTTTTTCTCTTTCTCATCTGGGATTTGATAAAAAGATTACTCTCTTTCCTGATGGCATGAAACATGTTGGAGATGGGCGTGCCATCTCAGGAATTCTGTCCCTTGATTTGGATATACCTTCATTACGAAGTTACGACAACGAGAGACATCATGAGAACTTCCTTCGAGAAATGCATGAATGTTGCATTTGCTTCAATGTATATGGAGGTAGGGAGTTTGCTCAGTTACCATGTCAGCATTTTTTCTGCTTAAAATGCTTGCAGACCTTTGCTCAGATCCATGTAAAAGAAGGCACCATCAGTAATCTTCAATGTCCCAATCCAAAATGTACTGTTATGATTCCACCTGCTCTGTTAAATCACTTGCTCAATGATAATGAGTATGAACGCTGGGAATCCTTGATGTTGGAGAACACACTTGCATCAATGTCTGATGTTGCTTATTGCCCAAGATGTGAAACACCTTGTATAGAGGATGAAGAACGGCATGCTCTATGCTCTAAATGCTTCTTCAGCTTTTGTACCATTTGCAGGGAGCGACGCCACGTTGGCATAGCCTGCAAGACCCTAGACATGAAGCTTGAAATTTTGCAAGAGCGCCAGAATTCATCTCAAATAGAGGTTTCTCAGAAGCTGAGGGAACTTGCGAAGATAAATGAAATCCTCAGCCTCCAAGAAATTCGTCGTGATTCTAAGCGGTGCCCTTCTTGTAGAATGGCTATTTACCGAACTGGAGGTTGCAATAAAATGACATGTCGTAATTGTGGGGATCGTTTCTGCTACCTCTGCAACAAAGCACTTGATAATAGCCTTGAACATTTCAGAGGCACTTCTCATACCTGTGAATTGTTCCCAAAAGAAGAGTTGGAGGCTTGGGAAGAACGCATGCGTCAGATGAGAGGACAGTTGGCGGGTTTCCGTTTTGGGTTCTTTCAACATGGCCCAGGCCAACGATGTCCTAATTGTCATCGATTTAATGCAAAGGTTTTTAGTTGTAAAATTGACTTGACCAAGGCGTTTCATCACCTGCTCATCCCTTTTGGTGGGAACATGAAAGGAGCTGGGTTGTCAGTGGTAGCTAAAGCTACCTTCAAGAACATCAAACCCGGCGGTTCTCAGACGAAGTTCCGGTACGTCGCGAAATCTGAATTGGATTCTTCTAATTCTGAGGTTGATCGTTCGCTTGAAGAATTAAGCATTCGCGAGGAGGCTGATGTCGCGCGAGCATTGGACCCGGGGAACAAGCACGCGCGGTTCGGAGCTGAAGAATGA | 2127 | 0.4382 | MKETKLVLEASVREAPTELVVEPSDLRLWVSMAAEASFKHHKPSDSQTKWRNQDGKLDFRYVAKSELDSSNSEADRSLEELSIREEVDNARALDPGNKHDSELKNEVGNKREENHVDDSSNEVNSVYSRLDRLMRDAREPELSEEQLSINDQLQEDELLALESIYGEHVFILERWKGLHCFQIQIHVEVLDEIDITAKLNSSNQDNTLSSIADDFTYSLKVKYLPPIILTCLLPKSYPSHQPPYFMIFVKWLDSTRISSLCSMLDSIWTEQQGQEVTYQWVEWLHGFSLSHLGFDKKITLFPDGMKHVGDGRAISGILSLDLDIPSLRSYDNERHHENFLREMHECCICFNVYGGREFAQLPCQHFFCLKCLQTFAQIHVKEGTISNLQCPNPKCTVMIPPALLNHLLNDNEYERWESLMLENTLASMSDVAYCPRCETPCIEDEERHALCSKCFFSFCTICRERRHVGIACKTLDMKLEILQERQNSSQIEVSQKLRELAKINEILSLQEIRRDSKRCPSCRMAIYRTGGCNKMTCRNCGDRFCYLCNKALDNSLEHFRGTSHTCELFPKEELEAWEERMRQMRGQLAGFRFGFFQHGPGQRCPNCHRFNAKVFSCKIDLTKAFHHLLIPFGGNMKGAGLSVVAKATFKNIKPGGSQTKFRYVAKSELDSSNSEVDRSLEELSIREEADVARALDPGNKHARFGAEE | 708 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju09g1292 | 708 | Gene3D | - | 470 | 597 | - | - | |
| Alju09g1292 | 708 | MobiDBLite | consensus disorder prediction | 87 | 119 | - | - | |
| Alju09g1292 | 708 | MobiDBLite | consensus disorder prediction | 87 | 122 | - | - | |
| Alju09g1292 | 708 | SUPERFAMILY | UBC-like | 150 | 287 | IPR016135 | - | |
| Alju09g1292 | 708 | CDD | Rcat_RBR_RNF14 | 504 | 569 | IPR047548 | GO:0008270 | |
| Alju09g1292 | 708 | CDD | RING-HC_ITT1-like | 340 | 399 | - | - | |
| Alju09g1292 | 708 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 157 | 575 | IPR031127 | GO:0004842|GO:0016567 | |
| Alju09g1292 | 708 | SUPERFAMILY | RING/U-box | 414 | 477 | - | - | |
| Alju09g1292 | 708 | ProSiteProfiles | TRIAD supradomain profile. | 342 | 570 | IPR044066 | - | |
| Alju09g1292 | 708 | ProSitePatterns | Zinc finger RING-type signature. | 363 | 372 | IPR017907 | - | |
| Alju09g1292 | 708 | SMART | ibrneu5 | 501 | 566 | IPR002867 | GO:0008270 | |
| Alju09g1292 | 708 | SMART | ibrneu5 | 414 | 472 | IPR002867 | GO:0008270 | |
| Alju09g1292 | 708 | SUPERFAMILY | RING/U-box | 508 | 554 | - | - | |
| Alju09g1292 | 708 | ProSiteProfiles | RWD domain profile. | 156 | 291 | IPR006575 | GO:0005515 | |
| Alju09g1292 | 708 | CDD | BRcat_RBR_RNF14 | 425 | 476 | - | - | |
| Alju09g1292 | 708 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 341 | 428 | IPR013083 | - | |
| Alju09g1292 | 708 | ProSiteProfiles | Zinc finger RING-type profile. | 346 | 394 | IPR001841 | - | |
| Alju09g1292 | 708 | FunFam | RBR-type E3 ubiquitin transferase | 341 | 425 | - | - | |
| Alju09g1292 | 708 | Pfam | IBR domain, a half RING-finger domain | 510 | 552 | IPR002867 | GO:0008270 | |
| Alju09g1292 | 708 | Pfam | IBR domain, a half RING-finger domain | 414 | 472 | IPR002867 | GO:0008270 | |
| Alju09g1292 | 708 | SMART | ring_2 | 346 | 393 | IPR001841 | - | |
| Alju09g1292 | 708 | SMART | ring_2 | 519 | 548 | IPR001841 | - | |
| Alju09g1292 | 708 | SUPERFAMILY | RING/U-box | 342 | 425 | - | - | |
| Alju09g1292 | 708 | Gene3D | Ubiquitin Conjugating Enzyme | 143 | 293 | IPR016135 | - | |
| Alju09g1292 | 708 | Pfam | RWD domain | 152 | 285 | IPR006575 | GO:0005515 | |
| Alju09g1292 | 708 | SMART | RWD2001b | 156 | 291 | IPR006575 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju09g1292 | Alju-ChrAlju09 | 36584649 | 36593382 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju09g1292 | 345 | 554 | C3H Transcription Factor Family | AT2G31760 | 24.186 | 3.91e-18 | 86.3 |