Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1288 ATGGGTAGGGTTCCATGCTGTGAGGAGAATAGTGGAGTGAAGAAAGGGCCATGGACAACAGAAGAAGATGAGAAGCTTATGGAATATATCAGCAAGCATGGCCATGGAAGTTGGAGGACGCTTCCAAAGAAAGCTGGTCTTAATAGGTGTGGCAAAAGCTGCAGGCTGAGGTGGACTAATTATCTGAGGCCTGATATTAAGAGAGGTAAATTCTCTGAAGAAGAAGACCGTATCATCATCAACCTTCATTCTGTTCTGGGAAACAAGTGGTCAAAGATTGCAGGGCATCTTCCAGGAAGAACAGACAATGAAATAAAGAACTACTGGAACACCCATATAAGGAAGAAGCTGCTACAGATGGGAATTGACCCAGAAACTCACAAACCGAGAACTGACTTCAATCACCTCCTCAATAATCTCTCTCACTTGCTTGGAATCTATTCATCATCAAACAATATGGGTCCATTATGGGGCAACAACAACAATCCTCTGTTGGCATCTTCACAACTAGATTTCACTTCTCAGCTTACCAAAATCCAACTTCTCCAAAACCTATTACAAATTGTTAATTCAAACCCTTGCCTCTTAGGCAATAATATTAATAATCATACCCTCAACCCACTTCAAATTCTGTCCTTTATGAATGGGACTAATGGTCTATTATTCCCTACGCAAGCACAGGGAGGATCTGGTTTAGAAGGTTTTGGTTTGAATAATGGTAGCAATAATATATATAATATTATTCCACATCATCAGAGCCATCATCAGTCGGAAATGACAATACCGGCTCTAGTCTCGGAGTCTCCGGTGACCGGCTCAGCCGTGAAGCGAACTGACGGTAGTAGCTGCAATACAGCTCTAGCGTCGTCCACTGATCAGTCACCAAATAATAATTCCTCTTCAATATTGTTTGAGAGTTGGGAGAAGTTCCTGGATGATGAAATGATGACTGGTTCTGACTGGAAGGAGATTCTTGAATTATCATCAACTTTGGCGTCTCCAATCTCGTGGATGAACTATATAAAAGGAACTCATAAAATTCAATAA 1047 0.4126 MGRVPCCEENSGVKKGPWTTEEDEKLMEYISKHGHGSWRTLPKKAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEDRIIINLHSVLGNKWSKIAGHLPGRTDNEIKNYWNTHIRKKLLQMGIDPETHKPRTDFNHLLNNLSHLLGIYSSSNNMGPLWGNNNNPLLASSQLDFTSQLTKIQLLQNLLQIVNSNPCLLGNNINNHTLNPLQILSFMNGTNGLLFPTQAQGGSGLEGFGLNNGSNNIYNIIPHHQSHHQSEMTIPALVSESPVTGSAVKRTDGSSCNTALASSTDQSPNNNSSSILFESWEKFLDDEMMTGSDWKEILELSSTLASPISWMNYIKGTHKIQ 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1288 348 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 276 - -
Alju09g1288 348 SMART sant 67 115 IPR001005 -
Alju09g1288 348 SMART sant 14 64 IPR001005 -
Alju09g1288 348 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Alju09g1288 348 FunFam Transcription factor MYB39 70 131 - -
Alju09g1288 348 Gene3D - 70 135 - -
Alju09g1288 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Alju09g1288 348 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Alju09g1288 348 Gene3D - 14 67 - -
Alju09g1288 348 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Alju09g1288 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Alju09g1288 348 MobiDBLite consensus disorder prediction 274 299 - -
Alju09g1288 348 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Alju09g1288 348 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Alju09g1288 348 FunFam MYB-related transcription factor 14 67 - -
Alju09g1288 348 CDD SANT 70 113 IPR001005 -
Alju09g1288 348 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1288 Alju-ChrAlju09 36524602 36529410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1288 1 326 MYB Transcription Factor Family AT5G16770 47.661 6.56e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju09g1288 Myb_DNA-binding 3.4e-16 CL0123