Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1281 ATGGATTATGGTCGAGATGGGAACGTCGTTCAAATAATCACTGGTGGTGGTGGAAATGAAAACTGGTCCGGTGACCAGGCCGTTTGGGCGACGGAAGAAGATTATCGATTCTGGGATGCTGACACTCCCTCGGATTCGAATTACGATCAAAGGCAGTCCCAATCACGATCTGGAAGCGAACCCCCAAATAAGAAATCTAGGAATTCTCAGGATGCGACTTCATCGAATCGGTCCAAAGCTATTGGGAAAATGTTCTTCAAGACAAAACTGTGTTGCAAATTCCGGGCCGGTACGTGTCCTTATATCACGAACTGCAATTTCGCCCACAGTGTTGAAGAGCTTCGTCGGCCACCGCCGAATTGGCAAGAAATTGTGGCTGCTCATGAAGAGGAAAAATCCATAATGTCAGAACCAAGAGAGGAGTTTCAAATTCCGTCCATTGGGTCGTCCGGGTTTGCTGGGGAGATGCAGAGAGCGTATAAAGGTCGCCATTGCAAGAAGTTTTACACGGAAGAAGGATGCCCATATGGAGATAATTGTACATTTCTTCATGACGAACAATCTAGGAATCGTGAGAGTGTGGCTATAAGTTTAGGCCCTGGTGGGTATGGTGGTGCTGGGAGTGGCTCTAATTCCAAGCCATCAAATTGGAAAACACGGATTTGCAATAAATGGGAGATGACTGGATATTGCCCATTTGGAAATAAATGCCATTTTGCTCATGGCGCTGCAGAGTTGCACCGATATGGCGGGGGGCCTATGGAGGGAGAAAATAGAGACACTGCATCTGCTACTGCTCCTGACACGAAGCAGAGTGGGGTGCCTTCGAAAACGCCTGCTGATAACGTCGTTTCATCGGTCACTCCTGTGGCTCATTCTGATGTCTATCATATCGGAGTTCCTTCACAAAGGTCTTCCATTGTGATTCAGAGGCCGGGCCATAGAGCTCATCAGAAGTGGAAAGGTCCAGATAAAATCAGTAGGATATATGGTGATTGGATTGATGACTTGGAATGA 1017 0.472 MDYGRDGNVVQIITGGGGNENWSGDQAVWATEEDYRFWDADTPSDSNYDQRQSQSRSGSEPPNKKSRNSQDATSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSVEELRRPPPNWQEIVAAHEEEKSIMSEPREEFQIPSIGSSGFAGEMQRAYKGRHCKKFYTEEGCPYGDNCTFLHDEQSRNRESVAISLGPGGYGGAGSGSNSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGAAELHRYGGGPMEGENRDTASATAPDTKQSGVPSKTPADNVVSSVTPVAHSDVYHIGVPSQRSSIVIQRPGHRAHQKWKGPDKISRIYGDWIDDLE 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1281 338 Gene3D - 153 199 - -
Alju09g1281 338 PANTHER CCCH ZINC FINGER/TIS11-RELATED 206 265 IPR045877 GO:0003729
Alju09g1281 338 ProSiteProfiles Zinc finger C3H1-type profile. 216 244 IPR000571 GO:0046872
Alju09g1281 338 FunFam Zinc finger CCCH domain-containing protein 81 117 - -
Alju09g1281 338 MobiDBLite consensus disorder prediction 43 77 - -
Alju09g1281 338 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 217 242 IPR000571 GO:0046872
Alju09g1281 338 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 110 IPR000571 GO:0046872
Alju09g1281 338 SUPERFAMILY CCCH zinc finger 214 247 IPR036855 GO:0046872
Alju09g1281 338 SUPERFAMILY CCCH zinc finger 83 116 IPR036855 GO:0046872
Alju09g1281 338 MobiDBLite consensus disorder prediction 250 282 - -
Alju09g1281 338 MobiDBLite consensus disorder prediction 34 77 - -
Alju09g1281 338 ProSiteProfiles Zinc finger C3H1-type profile. 85 112 IPR000571 GO:0046872
Alju09g1281 338 MobiDBLite consensus disorder prediction 262 282 - -
Alju09g1281 338 MobiDBLite consensus disorder prediction 196 217 - -
Alju09g1281 338 Gene3D - 209 248 - -
Alju09g1281 338 Gene3D - 80 116 - -
Alju09g1281 338 FunFam zinc finger CCCH domain-containing protein 15-like 210 249 - -
Alju09g1281 338 SUPERFAMILY CCCH zinc finger 159 187 IPR036855 GO:0046872
Alju09g1281 338 SMART c3hfinal6 216 243 IPR000571 GO:0046872
Alju09g1281 338 SMART c3hfinal6 85 111 IPR000571 GO:0046872
Alju09g1281 338 SMART c3hfinal6 159 186 IPR000571 GO:0046872
Alju09g1281 338 FunFam Zinc finger, CCCH-type 153 191 - -
Alju09g1281 338 ProSiteProfiles Zinc finger C3H1-type profile. 159 187 IPR000571 GO:0046872
Alju09g1281 338 Pfam CCCH-type zinc finger 163 185 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1281 Alju-ChrAlju09 36399145 36402596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1281 218 246 C3H Transcription Factor Family AT1G68200 62.069 2.70e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju09g1281 zf-CCCH 1.1e-10 CL0537