LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju09g1276	ATGGCTGCAATTGGAAACCCAAAAACTTGGATCCCCTATGTGAATATCAGAGATTGCTCTCAAGGTTTTTGCAGTGTGTACTGTCCACAATGGTGTTACATAGTTCTTCCTCCTCCTCCTCCTCCTGCCCTAGATTTCCCTCAAGACGAAGATTCTTCCCCAAATTTCTCTCCCCTCGTTATAGCCATAATTGGGATCTTGGCCAGTGCCTTTCTTCTGGTAAGTTACTACACTTTCATATCCAAGTACTGTGGAAACAGGGGAGGATCTTCAGACAGAGAGAACAATCTTCATCACCAGAATGATGAGATTGAAGATAATCACAACCCTTCGCTGCATGAGCCCTGGCATATCCAAACGAATGGATTAGATGAAGCTCTGATAAAGTCCATTACAGTTTGTAAGTACAAAAGAGGAGATGGGTTGGTTGGTGTCACAGATTGCTCTGTTTGTCTCAGTGAGTTTCGAGAAGATGAACATGTCAGACTTTTGCCTAAGTGCAGTCACGCTTTTCACCTCCCCTGTATCGATCAATGGCTCAAATCTCACTCTAATTGCCCTCTCTGTCGTTCTCTTATCTTCACCTTCAATAATTCCTCAACCCCTCAAGTGACGGTTCCACCTGTGATACAAGAATCAGAATCAGAATCAGAATCTTCCTCTGGAAATAATGAATCTTCTTCTTCTTCAAGGGAGATTCAGAATGCGAGTGAAGAAAATGGAGTTGGGGTTGGAAGAAGGAGCGATGAAACAGTTGGGGTTGTGGAAGAAGGTCCGAAGCCGGCGTTGCGAGCTTTTAGTGATCTGGGTTTTCTGAGAGGGAGGCATAGAATGATTGAGATGATAAGAGATGAAGGGGATGAAGAAGATGAAGCCATAAGAAGATCAGTGTCCATGGATCATCATTCTCTACAAATTGGAGGAGGAGCAATAGGATCAAACGAAGCAAGTACTTCAAAGAGATCATCACAAGGAGAAAGTAGCAAATCTAGTAGCAGAAGAAGAGTGATTCTGCATTGTGTTTTGAGTCCAATCACAATGAAGAGATCATTTTCCAGTGGAAGATTCTCGTTTCGTAGAAATGGCAGAGGAAGGCAGGGGATTATCCCTGTTTGA	1116	0.4328	MAAIGNPKTWIPYVNIRDCSQGFCSVYCPQWCYIVLPPPPPPALDFPQDEDSSPNFSPLVIAIIGILASAFLLVSYYTFISKYCGNRGGSSDRENNLHHQNDEIEDNHNPSLHEPWHIQTNGLDEALIKSITVCKYKRGDGLVGVTDCSVCLSEFREDEHVRLLPKCSHAFHLPCIDQWLKSHSNCPLCRSLIFTFNNSSTPQVTVPPVIQESESESESSSGNNESSSSSREIQNASEENGVGVGRRSDETVGVVEEGPKPALRAFSDLGFLRGRHRMIEMIRDEGDEEDEAIRRSVSMDHHSLQIGGGAIGSNEASTSKRSSQGESSKSSSRRRVILHCVLSPITMKRSFSSGRFSFRRNGRGRQGIIPV	371

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju09g1276	371	MobiDBLite	consensus disorder prediction	300	333	-	-
	Alju09g1276	371	SMART	ring_2	148	189	IPR001841	-
	Alju09g1276	371	FunFam	RING-H2 finger protein ATL54	123	196	-	-
	Alju09g1276	371	PANTHER	RING-H2 FINGER PROTEIN ATL16	44	335	IPR044600	GO:0016567\|GO:0016740
	Alju09g1276	371	MobiDBLite	consensus disorder prediction	203	237	-	-
	Alju09g1276	371	CDD	RING-H2_EL5-like	147	190	-	-
	Alju09g1276	371	ProSiteProfiles	Zinc finger RING-type profile.	148	190	IPR001841	-
	Alju09g1276	371	SUPERFAMILY	RING/U-box	147	196	-	-
	Alju09g1276	371	Pfam	Ring finger domain	147	190	IPR001841	-
	Alju09g1276	371	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	123	196	IPR013083	-
	Alju09g1276	371	MobiDBLite	consensus disorder prediction	203	256	-	-
	Alju09g1276	371	MobiDBLite	consensus disorder prediction	310	331	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju09g1276	Alju-ChrAlju09	36370528	36371643	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju09g1276	6	371	C3H Transcription Factor Family	AT5G17600	41.161	1.67e-68	218