Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1275 ATGGCCACTTTAGAATCTGGACTAACAGTCTTGGGATCTTTCCGCTGTTTCAATAAGTACTCTTCATCTGCGAAACCATTCTATTCGATAAAGCTCAACGTCTCCACTTCCCTTTCTCCCATTTCCTACAAATGCGTTGCCCCCTCAATTTTCTCTTCTATCGACTCCAGCAAAAGGCTCTGCTTCGAATTATGCTCTGCTCTGCAAGAGGCGGCAACAGAAGAAAAATCAGAGCAAACCCAGGAAACCAACATAAAGAAGAAGCTCTGCGTGTTTAATCTACCATGGTCGCTATCGGTGGTGGACATCAAAAACCTCTTTGGTCAATGCGGAACTATAACCGATGTCGAGATAATAAAAACCAAAGATGGGAAGAGCAGAGGATTTGCCTTCGTCACTATGGCTTCCGGGGAAGAGGCTCAGGCTGCGATTGATAAATTGGATTCTCATGAATTGTCTGGCAGGATAATAAGGGTAGAGCTTGCAAAGAGATTCAAGAAACCTCCTCCTTCAGGCCCTCCTCAAACTCCCCCTGCTGGTGAAACAAGCCATAAAATTTATGCGTCGAATCTTGCATGGAAAGCAAGGTCCAGCCATCTCAGAGCATTCTTCACAGAGAATTTCAAACCACCAGTTTCAGCCAGGGTTGTCTTTGACAGCCCTAATGGAAGATCTGCTGGCTATGGATTTGTTTCTTTTGCCACAAGGGATGAAGCAGAGGCCGCCATTTCTACTCTTGATGGGAAGGAATTAATGGGGCGACCTGTTCGCCTAAAATTCAGCGAAAGGACTGTTAAAGAATCTGGGGATGAGAGAGGTTCTGATGATGAACCGGCAGAATCATGA 846 0.4551 MATLESGLTVLGSFRCFNKYSSSAKPFYSIKLNVSTSLSPISYKCVAPSIFSSIDSSKRLCFELCSALQEAATEEKSEQTQETNIKKKLCVFNLPWSLSVVDIKNLFGQCGTITDVEIIKTKDGKSRGFAFVTMASGEEAQAAIDKLDSHELSGRIIRVELAKRFKKPPPSGPPQTPPAGETSHKIYASNLAWKARSSHLRAFFTENFKPPVSARVVFDSPNGRSAGYGFVSFATRDEAEAAISTLDGKELMGRPVRLKFSERTVKESGDERGSDDEPAES 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1275 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 263 IPR000504 GO:0003723
Alju09g1275 281 SMART rrm1_1 88 160 IPR000504 GO:0003723
Alju09g1275 281 SMART rrm1_1 185 259 IPR000504 GO:0003723
Alju09g1275 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 256 IPR000504 GO:0003723
Alju09g1275 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 157 IPR000504 GO:0003723
Alju09g1275 281 CDD RRM_SF 89 160 - -
Alju09g1275 281 SUPERFAMILY RNA-binding domain, RBD 76 172 IPR035979 GO:0003676
Alju09g1275 281 Gene3D - 175 280 IPR012677 -
Alju09g1275 281 Gene3D - 65 174 IPR012677 -
Alju09g1275 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 164 IPR000504 GO:0003723
Alju09g1275 281 MobiDBLite consensus disorder prediction 261 281 - -
Alju09g1275 281 PANTHER OS02G0815200 PROTEIN 48 261 - -
Alju09g1275 281 SUPERFAMILY RNA-binding domain, RBD 167 265 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1275 Alju-ChrAlju09 36359438 36362092 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1275 89 271 Eukaryotic Initiation Factors Gene Family AT4G34110 26.633 6.90e-12 63.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g1275 09 36359438 36362092 Alju09g1275 09 36359438 36362092 ECH