Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1262 ATGACAGACTATAGGTCGCCGCCGACGATGAATCTTTGGACCGATGATAACTCCTCCGTTATGGACGCTTTTATGAGCTCCGATCTATCTGTACTCTGGCCTAATCCGCCTCAGCCCCAATCCTCTGCTTCCACTACTACTCCTGGCCCCGACCCGACCAAGCCTTTCTCTCACTCTCAGTCTTCCGCTGCTCTCTTCAATCAAGAAACCCTACAGCAGCGTCTTCAGGCCTTGATTGAAGGTGCCAGAGAGAGCTGGACCTACGCTATCTTTTGGCAATCGTCGTACGACTACTCCGGCGCGTCTTTGCTCGGCTGGGGCGACGGATACTACAAAGGGGAGGAAGATAAAGGAAAAGGGAAGGCCAAAATGCTGTCGTCCGCGGCGGAGCAGGAGCATCGGAAGAAGGTTCTACGCGAGCTTAATTCCCTCATTTCTGGATCCTCTGCCCCCAGTGACGATGCCGTGGACGAAGAAGTCACCGATACGGAGTGGTTCTTTCTCGTTTCCATGACTCAATCGTTTGTCAACGGCGACGGGTTACCGGGTCAGGCCTTCTACAATTCCACCCCGGTCTGGATCACCGGTGGGGAGAGGTTGACGGCTTCGACTTGTGAAAGAGCGAGACAGGGCCAGGTGTTCGGGCTTCAGACTTTGGTTTGTATACCGTCGGCGAACGGGGTGGTGGAGCTGGGATCCACTGAATTGATTTTCCAGAACTCGGATCTGATGAACAAGGTGAAAGTATGGTTCAATTTCAACAATCCAGATATTGGTTCGTGGCCTCTCATGACTCCTAACGCCGATCAAGGTGAGAACGACCCTTCCTCGCTTTGGCTTAACGATCCGTCTTCTGGAATTGAAATCAGAGATTCGACCAACAACACTGTTCTGGCTTCGGTTCCGAGCTCAAATAACAGTCACAACATCCAGACTGTCGCTAAGCCAATGCAGTTTGAAACCCCAGTTTCGAGCACTTTAACTGAAGCACCAAGTGTTGTTCATGTCCCGAATACTCAATATGGTAACCAGCAACGGCAACAGCCACAGCAATTGCAGAACCAGGGGTTCTTCTCGAAGGAGTTGAACTTTTCGGAATATGGATTCGACGGAAACGGCCTAAAGAACGGGAATATGCATTCCTTGAAGCCCGAATCAGGTGAAATTTTGAACTTCGGGGAGAGCAAGAGGAACTCTTATGGTGGAAATGGGAATTTCTTTACAGGACAGAGTCCATTCGTTGCAGAAGACAACAAAAAAAGGAGGTCGCCTACTTCCAAGGGTAGTAACGATGAAGGGATGCTCTCGTTTACTTCTGGTGTGATTTTGCCGGCTTCTAATATGAAGTCTAGCGGCGGCGGCGGCGGCGGCGGCGATTCCGATCACTCGGATCTTGAAGCGTCGGTGGTGAAGGAAGCGGATAGTAGCAGAGTGGTAGAACTAGAAAAACGACCTCGCAAAAGAGGACGAAAGCCGGCGAATGGCAGGGAGGAGCCTCTGAATCACGTTGAAGCAGAGAGGCAGAGAAGAGAGAAGCTGAATCAGAGGTTCTACGCACTTCGAGCAGTGGTCCCAAACGTGTCAAAAATGGACAAAGCATCCCTGCTAGGCGACGCCATATCTTACATCAACGAGCTCAAATCGAAGCTCCAGAATCTAGAATTAAACAATAATGATTTACAGAAACAGCTGGATTCAGTCAAGAAGGAACTCGAGGTGGCCACTGGTGAAGATTCTCGTGCGCCTCCTCCATCAGACAAGGAACAAAAGACCTCCAACAACAACCAAGTAAACGGCAAGCTAATAGATTTAGACATCGATGTGAAGATCATAGGTTGGGATGCAATGATTCGAATCCAATGTAGCAAGAGGAATCATCCAGCAGCAAGGTTGATGGCTGCTTTACAGGAGCTAGACCTGGAAGTGAACCACGCAAGTGTGTCAGTAGTGAATGATCTGATGATCCAACAAGCAACAGTAAAGATGGGAAGTCGATTTTACACGCAGGAGCAGCTCCGGCTAGCTCTTACATCCAAGGTTGGAGATGTCCGATGA 2055 0.4988 MTDYRSPPTMNLWTDDNSSVMDAFMSSDLSVLWPNPPQPQSSASTTTPGPDPTKPFSHSQSSAALFNQETLQQRLQALIEGARESWTYAIFWQSSYDYSGASLLGWGDGYYKGEEDKGKGKAKMLSSAAEQEHRKKVLRELNSLISGSSAPSDDAVDEEVTDTEWFFLVSMTQSFVNGDGLPGQAFYNSTPVWITGGERLTASTCERARQGQVFGLQTLVCIPSANGVVELGSTELIFQNSDLMNKVKVWFNFNNPDIGSWPLMTPNADQGENDPSSLWLNDPSSGIEIRDSTNNTVLASVPSSNNSHNIQTVAKPMQFETPVSSTLTEAPSVVHVPNTQYGNQQRQQPQQLQNQGFFSKELNFSEYGFDGNGLKNGNMHSLKPESGEILNFGESKRNSYGGNGNFFTGQSPFVAEDNKKRRSPTSKGSNDEGMLSFTSGVILPASNMKSSGGGGGGGDSDHSDLEASVVKEADSSRVVELEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKLQNLELNNNDLQKQLDSVKKELEVATGEDSRAPPPSDKEQKTSNNNQVNGKLIDLDIDVKIIGWDAMIRIQCSKRNHPAARLMAALQELDLEVNHASVSVVNDLMIQQATVKMGSRFYTQEQLRLALTSKVGDVR 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1262 684 MobiDBLite consensus disorder prediction 401 507 - -
Alju09g1262 684 PANTHER MYC 47 679 IPR045084 GO:0003700|GO:0006355
Alju09g1262 684 MobiDBLite consensus disorder prediction 569 596 - -
Alju09g1262 684 Pfam Helix-loop-helix DNA-binding domain 501 546 IPR011598 GO:0046983
Alju09g1262 684 MobiDBLite consensus disorder prediction 428 446 - -
Alju09g1262 684 Gene3D - 489 575 IPR036638 GO:0046983
Alju09g1262 684 Coils Coil 536 577 - -
Alju09g1262 684 MobiDBLite consensus disorder prediction 29 61 - -
Alju09g1262 684 FunFam Transcription factor bHLH13 490 564 - -
Alju09g1262 684 CDD bHLH_AtAIB_like 494 570 - -
Alju09g1262 684 SMART finulus 503 552 IPR011598 GO:0046983
Alju09g1262 684 MobiDBLite consensus disorder prediction 464 507 - -
Alju09g1262 684 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 71 251 IPR025610 -
Alju09g1262 684 MobiDBLite consensus disorder prediction 569 585 - -
Alju09g1262 684 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 498 567 IPR036638 GO:0046983
Alju09g1262 684 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 497 546 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1262 Alju-ChrAlju09 36163720 36165774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1262 1 681 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 55.492 0.0 654
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju09g1262 bHLH-MYC_N 1.1e-55 CL0161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g1262 09 36163720 36165774 Alju09g1262 09 36163720 36165774 ECH