Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1217 ATGAAGAATAGTGATTCCTTCATGTGGTGGTTTGGAATGACTGTGCAGCTTTGCTTCTTGCTTTTCATTGGTTTCTCTGAGGGTTCCACCTCAATTAGAAGAGCTTTACTGAAGAATAACCTCACACAAGCGTCATCTTCTCCTGCGGTCAAGCTAGATCAAAATCATAACCAGGTTGTGATAGATAATGGAATCGTCCAAGTAACGTTGTCCAAACCAGAAGGCTACGTCCTTGCAATATCCTACAATGGAATTGACAATGTACTCGAAGCTCAAAACCAAAATAATAATAGAGGGTATCTTGACGTTGTTTGGAGTACTGATGAAGGTTTTCAGAAAATCGAGGGGACCAAGTTCTCAGTCGTAGAAAAGACCGAAGATCAAGTGGAAGTTTCATTTTTAAGAGAATGGACACATTCCATGAACGGATCAGTCCCTATAAAAATAGACATGAGGTACGAAATAATGAACTTAACTACTTACTGTCGTTATTATAGGTATATAATGCGAAGAGGGAACTCGGGATATTACTCGTACGCAATATTTGAGCGGCCAGAAGGATTTCCGGCAGCGCAGGTTTTTCAGATCAGGCTGGTTTATAAGCTCCGACAAGACAAGTTCTACTATATGGCTATATCAAGGAAGAGGCAAAGAGTAATGCCAACAGCTGAGGATAGAAGCAGTGGACAGAAACTGGCTTATCCTGAAGCTGTTCTCTTGACCCATGCTCAGAATCCAAGAATTAGAGGAGAGGTGGATGATAAATATCAGTATTCGGCGGAGAACAAAGACAACTGCGTTCATGGATGGATTAGCTTTGACACTGAACCACACACGGGTTTCTGGGTTATAGCGCCAAGTAGTGAGTTTCGTCATGCTGGGCCCCACAAGCAGGATCTCACTTCTCATGTTGGCCCCACCTCTCTTGCTATGTTTGTGAGCACTCACTACGCCGGAACAAGTGTGTCGATTAATTTTGAAGAAGGCGAGACTTACAAGAAGGTGTTTGGCCCTATTTTTGTCTATCTCAACTCTGCTCCTAGTCAGGATAATTTAGACTCGCTCTGGTCAGATGCTGTTCGACAGTTCAATGAGGAAGTCAGAAGCTGGCCCTATGATTTCCCTCGATCTCCAGATTTCATTCTACCTGATAAACGAGGAACAGTAAAAGGCCAATTACGAGTCCGAGATTGGTTCAAGAAGGGATGGGGAATCATAAATGCTAAGTTTGCTTATGTTGGTTTAGCTCTGCCTGGAGAAAATGGATCATGGCAGAGAGAAAGCAAGGGTTATCAATTCTGGACTCAAGCTGATGAGAATGGATACTTTGAAATCAAATATGTTATACCAGGAGACTATAATTTCTACGCCTGGGTTCCTGGCTTTATTGGTGATTACAGATATAATGCTACAATTACCATCAAACCAGGCGGCGTCATTAAATTGGGTTCACTTGTATATAGTCCTCCAAGGAATGGTCCTACCATATGGGAAATTGGTGTCCCGGATCGCTCAGCCGGAGAGTTATTCATACCAGACCCTGACCCTAAGCTTGTGAACAGATTGTACCAGAACGATACAAGAAACAGGTTTAGACAATATGGGTTGTGGGAACGTTACACTGACTTATATCCAGAGAAAGATCTAGTTTATAATGTTGGCGTCCATAAGCATGACAAGAATTGGTTTTTTGCTCATGTTGCCAGAAGGACAGGAAATCAAACATACCAACCAACAACATGGCAGATTATATTTGAACTTAACGATGACACATCATCAGGAAACTACACGCTTCAAGTGGCCTTAGCATCAGCAAATGACGCCAAGTTGCAGGTTTGGTTCAATGATGCGAGAGACGTTAATCCGCACTTCGAGACAGCGAGGATGGGAAAAGACAATGCAATAGCCAGGCATGGCATTCATGGATTGTATAGTTTGATCAGTGTTGAGGTTCCAAGTGATCGATTTAAAAAGGGAAACAATATTATCTATTTGAAGCAGTCAGAAGCTTCAGGTTCATTCCAAGGTGTTTTGTATGATTATCTCCGTTTAGAAAGACCTCCAATTACTGGAAGGATGTGA 2082 0.4227 MKNSDSFMWWFGMTVQLCFLLFIGFSEGSTSIRRALLKNNLTQASSSPAVKLDQNHNQVVIDNGIVQVTLSKPEGYVLAISYNGIDNVLEAQNQNNNRGYLDVVWSTDEGFQKIEGTKFSVVEKTEDQVEVSFLREWTHSMNGSVPIKIDMRYEIMNLTTYCRYYRYIMRRGNSGYYSYAIFERPEGFPAAQVFQIRLVYKLRQDKFYYMAISRKRQRVMPTAEDRSSGQKLAYPEAVLLTHAQNPRIRGEVDDKYQYSAENKDNCVHGWISFDTEPHTGFWVIAPSSEFRHAGPHKQDLTSHVGPTSLAMFVSTHYAGTSVSINFEEGETYKKVFGPIFVYLNSAPSQDNLDSLWSDAVRQFNEEVRSWPYDFPRSPDFILPDKRGTVKGQLRVRDWFKKGWGIINAKFAYVGLALPGENGSWQRESKGYQFWTQADENGYFEIKYVIPGDYNFYAWVPGFIGDYRYNATITIKPGGVIKLGSLVYSPPRNGPTIWEIGVPDRSAGELFIPDPDPKLVNRLYQNDTRNRFRQYGLWERYTDLYPEKDLVYNVGVHKHDKNWFFAHVARRTGNQTYQPTTWQIIFELNDDTSSGNYTLQVALASANDAKLQVWFNDARDVNPHFETARMGKDNAIARHGIHGLYSLISVEVPSDRFKKGNNIIYLKQSEASGSFQGVLYDYLRLERPPITGRM 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1217 693 Gene3D - 492 685 - -
Alju09g1217 693 SUPERFAMILY Galactose-binding domain-like 492 685 IPR008979 -
Alju09g1217 693 CDD RGL4_N 57 352 - -
Alju09g1217 693 CDD RGL4_M 385 485 IPR029413 -
Alju09g1217 693 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 53 688 - -
Alju09g1217 693 SUPERFAMILY Starch-binding domain-like 383 483 IPR013784 GO:0030246
Alju09g1217 693 Gene3D - 383 482 - -
Alju09g1217 693 Pfam Polysaccharide lyase family 4, domain III 495 684 IPR029411 -
Alju09g1217 693 Gene3D - 49 361 IPR014718 GO:0030246
Alju09g1217 693 FunFam Rhamnogalacturonate lyase B 383 482 - -
Alju09g1217 693 Pfam Polysaccharide lyase family 4, domain II 410 481 IPR029413 -
Alju09g1217 693 Pfam Rhamnogalacturonate lyase family 42 252 IPR010325 -
Alju09g1217 693 CDD RGL4_C 497 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1217 Alju-ChrAlju09 35633316 35641739 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1217 46 688 Polysaccharide Lyase AT1G09910 53.005 0.0 687