Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1194 ATGAATACAAGAGTTTCAAGGACAAGTGAGGTTCCTTCTTATAGGGACACTCACAACTATTGGGCTGCAGGGCAACACAACAATAAGCCCTGCAGGTTTGTGCGCAATGAAACTTCACTGCAGTCCGCTCCACATAATGGTGCTTGTATGAAACTTAATAAGTGTGAAGCAGATGGCATAATATACTCTAATGCCAAAGGCAACTCATCTCAAATTTGCAAATACTGGATCAAAGGAAATTGTGCACATGGTGATCGCTGTTGGAACTTACATTCCTGGTTTCACGGTGATGGTATTTCCATACTCACTAAGCTCCATCAACATAAGAAGATTGTCACTGGGATTACACTTCCAGTTGGATCCGACAAACTTTTTTCCTGTGGCACTGATGGGACACTTCGAATGTGGGATTGTAATACGGGTCAATGTGTTAATGTGATAAATTTGGGTGATGAAGCAAGGTGTTTGATCAGTATGGGTTCATGGGTTTTTGCTGGTATGCGGAGTGCTATTAAGACGGGTGCTGAGATCACTCTTGATGGACCTAAGGGTCATGTACTTTCCATGGCTGTTTGCAACGATACACTTTTCGCTGGAGCAATGGATGGTGTTATTTATGTATGGAGACTCAGTTCTGAAGGCAATTTCCCATTTAAATCATTGGGAACATTGACTGGCCACACCAAAGCTGTTGTTTGCTTAACTGGTGGTGGGGATAAGCTGTACTCAGGTTCCGTGGATCATAGCATTAAGGGTGTGGTTAAAATCAATGGGATGATTGACGCACAAGGAAAATCCATATTGTTTTGTTCATGCAAGAACCATTCAGTTGGGCTGTATGAAATGCCAACGTTTGCTGCGAGAGGAAGATTATTCTCAAAACAAGAGATTAGAGTAATAGAAGAAGGCCCCAATGGGCTCTTTTTCACTGGAGACGGAACTGGTTTGCTGACTGTCTGGAAATGGCTAGCAGAGACGGAGCCCAAAACCACATCTTCATGA 1002 0.4301 MNTRVSRTSEVPSYRDTHNYWAAGQHNNKPCRFVRNETSLQSAPHNGACMKLNKCEADGIIYSNAKGNSSQICKYWIKGNCAHGDRCWNLHSWFHGDGISILTKLHQHKKIVTGITLPVGSDKLFSCGTDGTLRMWDCNTGQCVNVINLGDEARCLISMGSWVFAGMRSAIKTGAEITLDGPKGHVLSMAVCNDTLFAGAMDGVIYVWRLSSEGNFPFKSLGTLTGHTKAVVCLTGGGDKLYSGSVDHSIKGVVKINGMIDAQGKSILFCSCKNHSVGLYEMPTFAARGRLFSKQEIRVIEEGPNGLFFTGDGTGLLTVWKWLAETEPKTTSS 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1194 333 Gene3D - 172 333 IPR015943 GO:0005515
Alju09g1194 333 Gene3D - 81 171 IPR015943 GO:0005515
Alju09g1194 333 Pfam WD domain, G-beta repeat 219 251 IPR001680 GO:0005515
Alju09g1194 333 Pfam WD domain, G-beta repeat 102 137 IPR001680 GO:0005515
Alju09g1194 333 ProSiteProfiles Trp-Asp (WD) repeats profile. 105 146 IPR001680 GO:0005515
Alju09g1194 333 SMART c3hfinal6 68 93 IPR000571 GO:0046872
Alju09g1194 333 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 105 137 - -
Alju09g1194 333 SUPERFAMILY WD40 repeat-like 86 326 IPR036322 GO:0005515
Alju09g1194 333 ProSiteProfiles Zinc finger C3H1-type profile. 67 94 IPR000571 GO:0046872
Alju09g1194 333 PANTHER - 252 326 IPR044715 -
Alju09g1194 333 SMART WD40_4 172 209 IPR001680 GO:0005515
Alju09g1194 333 SMART WD40_4 217 254 IPR001680 GO:0005515
Alju09g1194 333 SMART WD40_4 284 321 IPR001680 GO:0005515
Alju09g1194 333 SMART WD40_4 98 137 IPR001680 GO:0005515
Alju09g1194 333 SUPERFAMILY CCCH zinc finger 69 92 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1194 Alju-ChrAlju09 35207433 35209627 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju09g1194 WD40 0.0017 CL0186