Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1181 ATGGCTCGAGCTACGAACTGGCTGTCGTTTTCGTTGTCGCCGATGGAAATGCTGAGATCCTCTGATTCTCAGTTCGTCCAATACGACAACAACCTCTCTGCTAACAATTCCTCTCACTACTTCGTCGATAGTTTCTATGCCAATGGTTGGGCGAATCTGAAGTCGCAGGCAGATTACTATGGCCAAGTAGAGCAAAACCAAAGTGAAGAGAGCTTGGGGGGCCCACAAAATCAGAACGACGGCGTACCGAAGCTGGAAGATTTTCTGGGCTACTCCGATAGCCAGACAGAGACGCAAGATTCGTCGCTGACGCAGATATACGAGCATGGCGGCGGTGGCTACTTCGCCGACCCTCAAGATCTGAAAGCAATCGCTGGGTTTCAAGCTTTCTCTGCGAACTCCGGCTCGGAGGTGGAGGACTCGGCGTCCATGGCCAAGACTGCTCATCAGGCTGCTTGTGGGGAGTTCGCGATCGAGTCGTCAGGTAACGACGTGGCGTTCTCTGGCTGCGCCGCCACGGGTGCTCTGTCCCTCCGCGTCGCTCAAAGTCGCGAGAAAGCCATTGTTGCGGTGGATTCAGATAGCTCAAAGAAAGTTGCCGATACATTTGGTCAGCGAACTTCAATCTACAGAGGCGTTACAAGACACCGATGGACGGGAAGATATGAAGCGCATCTATGGGATAACAGTTGCAGAAGAGAGGGTCAGGCAAGGAAAGGACGTCAAGGTGGATATGACAAAGAAGACAAGGCTGCGAGGGCTTATGATTTGGCTGCTCTCAAGTATTGGGGTCCGACTGCTACCACCAACTTTTCTGTTTCGAATTACACAAAGGAATTGGAGGAGATGAAACATGTAACAAAGCAAGAATTCATTGCTTCACTGAGAAGGAAAAGTAGCGGCTTTTCTAGAGGAGCTTCTATTTACAGGGGCGTAACAAGGCATCATCAGCAAGGTCGATGGCAAGCAAGAATAGGTCGCGTTGCAGGAAACAAAGATCTATACCTTGGAACATTTGCAACTGAAGAGGAAGCAGCAGAGGCATACGATATTGCAGCCATTAAATTCAGAGGTGCAGGTGCAGTGACCAACTTTGAGATGAACAGATATGATGTGGATGCTATTATGAAGAGTACTCTTCCTGTTGGTGGATCAGCCAAACGAGCAAAACATTCCCCAGAAGAATCCGAACACAAAATTAATGTTCTTCCTAGTAATATCATCCACCAGCAACCTCAGTATCATCCAAACGCCATTAATGCTAACGTTGGAACTATCAGTTTTACACCCATTCAACCTTCACTTGCTGCTTCTATCCCTTGTGCCATTCCCTATGATTCTGCAGCTGCACATCATTACCACCCCAATCTCTTGCGCTATTTTTATCCTACTAGCAGCTCTGCGACTGTGGATACTTCTGCCGTATCTGTGGCCTCTGCTCCGATGAATGCCCTGCCGACCGCTGCTGCTGAGTTTTTTCTGTGGCCTCATCAGCCATTTGATGCCCGCTGCCTCAAAGACGTCGGTGCTGCTCAAGATAATGCCCTCGAGATTGTGCTTTCTACTTCCTCCTCCATCCTTTTCTCTATCGTCGTGATTCTCCCCACTGAAGCTCGCCTCTTCTCTCCTTTATCATCTCTCTGA 1644 0.4909 MARATNWLSFSLSPMEMLRSSDSQFVQYDNNLSANNSSHYFVDSFYANGWANLKSQADYYGQVEQNQSEESLGGPQNQNDGVPKLEDFLGYSDSQTETQDSSLTQIYEHGGGGYFADPQDLKAIAGFQAFSANSGSEVEDSASMAKTAHQAACGEFAIESSGNDVAFSGCAATGALSLRVAQSREKAIVAVDSDSSKKVADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEDKAARAYDLAALKYWGPTATTNFSVSNYTKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGAGAVTNFEMNRYDVDAIMKSTLPVGGSAKRAKHSPEESEHKINVLPSNIIHQQPQYHPNAINANVGTISFTPIQPSLAASIPCAIPYDSAAAHHYHPNLLRYFYPTSSSATVDTSAVSVASAPMNALPTAAAEFFLWPHQPFDARCLKDVGAAQDNALEIVLSTSSSILFSIVVILPTEARLFSPLSSL 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1181 547 CDD AP2 208 274 IPR001471 GO:0003700|GO:0006355
Alju09g1181 547 FunFam AP2-like ethylene-responsive transcription factor ANT 208 274 - -
Alju09g1181 547 SUPERFAMILY DNA-binding domain 208 274 IPR016177 GO:0003677
Alju09g1181 547 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 77 400 - -
Alju09g1181 547 PRINTS Ethylene responsive element binding protein signature 348 368 IPR001471 GO:0003700|GO:0006355
Alju09g1181 547 PRINTS Ethylene responsive element binding protein signature 210 221 IPR001471 GO:0003700|GO:0006355
Alju09g1181 547 MobiDBLite consensus disorder prediction 65 88 - -
Alju09g1181 547 ProSiteProfiles AP2/ERF domain profile. 209 272 IPR001471 GO:0003700|GO:0006355
Alju09g1181 547 CDD AP2 307 366 IPR001471 GO:0003700|GO:0006355
Alju09g1181 547 Gene3D AP2/ERF domain 308 368 IPR036955 GO:0003700|GO:0006355
Alju09g1181 547 Gene3D AP2/ERF domain 209 274 IPR036955 GO:0003700|GO:0006355
Alju09g1181 547 Pfam AP2 domain 308 358 IPR001471 GO:0003700|GO:0006355
Alju09g1181 547 Pfam AP2 domain 209 264 IPR001471 GO:0003700|GO:0006355
Alju09g1181 547 SUPERFAMILY DNA-binding domain 307 367 IPR016177 GO:0003677
Alju09g1181 547 ProSiteProfiles AP2/ERF domain profile. 308 366 IPR001471 GO:0003700|GO:0006355
Alju09g1181 547 FunFam AP2-like ethylene-responsive transcription factor 307 368 - -
Alju09g1181 547 SMART rav1_2 209 278 IPR001471 GO:0003700|GO:0006355
Alju09g1181 547 SMART rav1_2 308 372 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1181 Alju-ChrAlju09 35029628 35034387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1181 82 500 AP2-EREBP Transcription Factor Family AT5G10510 55.533 7.80e-151 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Alju09g1181 AP2 1.3e-08 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g1181 09 35029628 35034387 Alju12g1528 12 36539740 36543972 CCT