Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1093 ATGAGCGTATCCACTCAAGAGACTGGACATTTAGAAGCGGTGGCAGCTGTGGCGGAGCCCGAGATAAGGTACGCGACGCTGTCTTCGTTGTGTTTCGTGGCGGTCACTTCCTTACTTCATATGGAGGAAATGTACGGTCTCTCGTCCTTCCCTGTGGATTACTCCGACAAAGCCATCATGTCGCCGGATAATCTGATTTTCCCCGACGACTACCAGAGCTTCCTCATATCTTCCTCCTCGGCCGCCGCACCATCACCTGGCTGCTTCTGTGATCGGATTCCCGTTTTAGGATCCGACGAGTTGCTTTCGGCTGCTTCCGCGATTACCGAAGCCGAAGCCGACGGCGCTGCTCCGGAATTTCGGCGGCAAGAGGACGACGACTCGTACTCCGTCATCAAAGCTAGAATTGCATCTCATCCTCACTATCCTCGTCTCATTCAAGCTTATATCGATTGCCAGAAGGTAGGAGCACCACCAGAAATAGCGTCTTTGTTAGAAGAAATCCGGCGAGAAAACGACGTTAGCAAGAGGGACGTTGTTTCCACGTGCTACGGAGAAGACCCCGAGCTCGACGAGTTCATGGAAACATACTGCCACGTGCTGATGAAGTATAAATCTGATCTTGCTCGGCCTTTTGATGAAGCAACCTCCTTCCTTAACCAGATCGAAAACCAGCTCACCAATCTCTGTACCGGTGGTTCCGTTCTAAGCCTTTCCGATGATGGTGGGGCTGTGTCTTCGGAAGAAGATTTGAGTATTACTGAAGGTGGAGACGCTGAAGCCAAAAGTGAAAAGCAAGAGCTTAAGGATAGGCTTTTACGTAAGTTTGGGGATGGTATTGGCTCTTTGAAGTTGGAATTCTCTAAAAAGAAGAAGAAAGGTAAGCTCCCAAAAGAAGCCAGGCAAGCATTGTTTCAGTGGTGGACTGCTCACAACAATTGGCCTTACCCAACGGAAACTGATAAGGTTGCTCTCACCAAGTCAACGGGTCTAGACCAGAAGCAAATAAACAATTGGTTTATTAATCAGAGAAAGCGCCACTGGAAGCCATCTGAAAACATGAGCAACCGATTTTCTGCCACGGATGATCTTACTGGATGGTTTTTTACTGATGAATAA 1119 0.4861 MSVSTQETGHLEAVAAVAEPEIRYATLSSLCFVAVTSLLHMEEMYGLSSFPVDYSDKAIMSPDNLIFPDDYQSFLISSSSAAAPSPGCFCDRIPVLGSDELLSAASAITEAEADGAAPEFRRQEDDDSYSVIKARIASHPHYPRLIQAYIDCQKVGAPPEIASLLEEIRRENDVSKRDVVSTCYGEDPELDEFMETYCHVLMKYKSDLARPFDEATSFLNQIENQLTNLCTGGSVLSLSDDGGAVSSEEDLSITEGGDAEAKSEKQELKDRLLRKFGDGIGSLKLEFSKKKKKGKLPKEARQALFQWWTAHNNWPYPTETDKVALTKSTGLDQKQINNWFINQRKRHWKPSENMSNRFSATDDLTGWFFTDE 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1093 372 CDD homeodomain 299 351 IPR001356 GO:0003677
Alju09g1093 372 MobiDBLite consensus disorder prediction 241 264 - -
Alju09g1093 372 Pfam KNOX1 domain 132 173 IPR005540 GO:0003677|GO:0005634
Alju09g1093 372 SMART HOX_1 289 354 IPR001356 GO:0003677
Alju09g1093 372 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 106 357 - -
Alju09g1093 372 SMART KNOX1_2 130 174 IPR005540 GO:0003677|GO:0005634
Alju09g1093 372 SMART KNOX2_2 180 231 IPR005541 GO:0003677|GO:0005634
Alju09g1093 372 SUPERFAMILY Homeodomain-like 288 358 IPR009057 -
Alju09g1093 372 Pfam KNOX2 domain 184 230 IPR005541 GO:0003677|GO:0005634
Alju09g1093 372 Pfam Homeobox KN domain 307 346 IPR008422 GO:0003677|GO:0006355
Alju09g1093 372 Gene3D - 286 364 - -
Alju09g1093 372 SMART ELK_2 267 288 IPR005539 GO:0003677
Alju09g1093 372 ProSiteProfiles 'Homeobox' domain profile. 287 350 IPR001356 GO:0003677
Alju09g1093 372 ProSiteProfiles ELK domain profile. 267 287 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1093 Alju-ChrAlju09 33693745 33706449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1093 41 372 Homeobox Transcription Factor Family AT1G23380 62.500 6.22e-135 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Alju09g1093 KNOX2 5.1e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g1093 09 33693745 33706449 Alju12g1459 12 35805713 35811313 CCT
Alju09g1093 09 33693745 33706449 Alju09g1093 09 33693745 33706449 ECH