LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju09g1032	ATGAAGTTTCAAAGGGAAAACTGCTTCATACTATTTCTATTCTACATCACACTTGATCAAGCTTGTTCTCAAACTTCTTCAGCTTCTGGTTGCATCCTTGACATCCAATCTTCTACATCCTTAAATAATAAAAACTCTGATTGTGAATTACACAGCTGGGGAGGGTTTATAAATAGCTGTTGTGCATTAGATTTTAATGGTTACCTTAATGCATTAGGTATGCATGCCAATCTATCTGGAAAAATATACTTGAATTCTTCAGATCAAGAAACTTGCCTCGCATCGATGAATATTGAAGGATGTGGTGTGGAGAAGCTAAGTACTGCAGCTGGTGGTTGCTCTGAATTCTCTGTCATACATGTTATGGACAAACTAGGAGACAACTTGAGAAGATTAGATGAAGATTGTATGCCTTTGAGCAAGAATGGAAGAGAAAATGAGACTTGTACGGCGTGTTTGAGCAGGTGGGAGGAGATTGGTGCGATGTCAGACGGTAAAATGGAGCCGGGGTCTGCAGATTTGGATGTTAATCTTTGTAGGTTTGCTGTACTAATCTCACTTACAAGCATCAGACTTTATGATAGGGTGTCAATTGAGGCAGTTTATGAATGCCTTGGAACCTACAGCATAGAGAAAAATCAGCAAGTGGGAAAAACTGATGGCAATTCTAAGCTCATCTCGGGTCTCTGGATATTACCTTTTGGCATAATTGGAATCATAGTCATTGGGTTTCTTGCAGCATGGACCTTGAATAGAAGAAGAACTATTAGTGCCCGGACAAAACAAGAGGCAGAGAATTCAAGCCCTCTTAAGATAACTATCAAGGAAGTTTATATGGCGACCGACGATCTTAATGATTCAAATTATATTGGTCAAGGCATAGCTGGAAAAGTGTACAAAGGTATACTTTCCAACGGTCAGCATGTAGCCATCAAGCATATTGTCGGCGAAGAATACTTAGAGACATTTGTTAGAGAAGTGAGAAGCCTTTCTCATGTCAGACATCAAAATTTAGTATCTTTGGTTGGATACTGTGACAATGAAGGTGAATGCTTCCTAGTGTATGAGCTATGCCATGAAGGGAACCTCTCAGATTGGCTATTTGGCAAAGATAAAGTTCTTTCATGGGTTCAGAGACTTAAGATTGCAGTTGATTGTGCAAGAGGTCTAATGTTTCTCCACACCTATCCAGGTGGCTGCATTATTCACCGTGACATTAAGCCATCAAACATTCTAATTCACACCAACATGCAAGCAAAGCTTTCAGACTTTGGACTGTCCAAGGTAATGGACCTCGACCAATCATTTGTCAGCTCTGAGGTGAGAGGAACTTTAGGTTACATCGATCCTGAATACCGGAAAAACCGCCACGTAAAAGCCTCCGGAGATGTCTACAGTTTTGGAATAGTTTTACTGCAACTTCTTTCAGGACAGAAGGTCATTAACTTCGATTTCCAGATACCAATGTTCCTAGATAAAATGGCTAGAAATTTTGCTAGAGATGGGAATATATCAGAGTTTGCTGATCCTAAACTCAGAGGTGAGTACTCTGCAGAAGCATTTAGCGTCACACTAAAGCTCGCCGTCTCGTGCATAGGGCTTAAGCAGCAACGGCCATCGATAGAGCAAGTGCTACGCAGCCTTGAGAAGGCTCTGAAAATCACATCACAATTCACATCTTTCAGAGTGTAA	1692	0.4078	MKFQRENCFILFLFYITLDQACSQTSSASGCILDIQSSTSLNNKNSDCELHSWGGFINSCCALDFNGYLNALGMHANLSGKIYLNSSDQETCLASMNIEGCGVEKLSTAAGGCSEFSVIHVMDKLGDNLRRLDEDCMPLSKNGRENETCTACLSRWEEIGAMSDGKMEPGSADLDVNLCRFAVLISLTSIRLYDRVSIEAVYECLGTYSIEKNQQVGKTDGNSKLISGLWILPFGIIGIIVIGFLAAWTLNRRRTISARTKQEAENSSPLKITIKEVYMATDDLNDSNYIGQGIAGKVYKGILSNGQHVAIKHIVGEEYLETFVREVRSLSHVRHQNLVSLVGYCDNEGECFLVYELCHEGNLSDWLFGKDKVLSWVQRLKIAVDCARGLMFLHTYPGGCIIHRDIKPSNILIHTNMQAKLSDFGLSKVMDLDQSFVSSEVRGTLGYIDPEYRKNRHVKASGDVYSFGIVLLQLLSGQKVINFDFQIPMFLDKMARNFARDGNISEFADPKLRGEYSAEAFSVTLKLAVSCIGLKQQRPSIEQVLRSLEKALKITSQFTSFRV	563

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju09g1032	563	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	401	413	IPR008271	GO:0004672\|GO:0006468
	Alju09g1032	563	Pfam	SPARK	26	163	IPR043891	-
	Alju09g1032	563	ProSiteProfiles	Protein kinase domain profile.	284	552	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju09g1032	563	Pfam	Protein kinase domain	287	545	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju09g1032	563	SMART	serkin_6	284	555	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju09g1032	563	Gene3D	Transferase(Phosphotransferase) domain 1	359	560	-	-
	Alju09g1032	563	FunFam	probable receptor-like protein kinase At5g59700	358	562	-	-
	Alju09g1032	563	Gene3D	Phosphorylase Kinase; domain 1	245	357	-	-
	Alju09g1032	563	FunFam	Serine/threonine kinase protein	249	357	-	-
	Alju09g1032	563	PANTHER	LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1	205	553	-	-
	Alju09g1032	563	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	31	-	-
	Alju09g1032	563	SUPERFAMILY	Protein kinase-like (PK-like)	266	548	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju09g1032	Alju-ChrAlju09	32616627	32619686	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju09g1032	257	554	Receptor kinase-like Gene Family	AT1G30570	39.803	3.17e-57	204

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_URK-2	Alju09g1032		Pkinase	2.9e-42	CL0016