Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g0946 ATGGTGTCTTCACGAGGGGAAGCCCCGGGGCAACCCCAGATGATAGGTGGAGGTTCTCAGAAACTGACAACTAATGATGCCTTGCTCTATCTCAAGGCTGTCAAGGAAATGTTCCATGACAAGAGGGAAAAATATGATGACTTTCTGGAAGTCATGAAAAATTTCAAGGCACAAAGAATTGATACTGCTGGTGTCATAGCAAGAGTGAAGGAGCTGTTTAAAGGGCACAAAGATCTAATCTTGGGATTCAACACCTTCTTGCCCAAAGGATATGAAATCACACTTCCACTGGAGGACGAACAACCTCCTCAAAAGAAGCCTGTTGAATTTGAAGAAGCTATAAATTTTGTGAACAAAATTAAGGCTCGGTTTCAGGGCAATGATCATGTTTACAAGTCTTTTCTAGACATATTGAATATGTACAGAAAGGAAAACAAGTCTATCACCGAGGTCTATCAAGAGGTTGCTGTTCTTTTCCAAGACCACCAAGACCTGCTTGTTGAGTTCACTCACTTTCTTCCAGATGCTTCAGCAGCAGCTTCTGCTCATTATGCTCAGTCAGCTCGGAACTCTTTGCTTCATGATAGGAGTTCTGTAATGCCAGCAGTGGGGCAAATGCGTCCTGACAAGAGGGAAAGGATCATGTCTCATGACCGTGACCATAGTGTTGATCATCTGGATCCAGATGACAAAGGTTATATGAGGACAGAAAATGAGCTCAGAAGGCGTGGTGAGAAGGAAAAGGACCATAGAGAAGATAGAGACAGGAAAGAGCGGAAATATGATGATGGAGCTTATGAGCATGATAATAGTCAGGAATACAACATGAGGAATTTCCCCCACAAACCGAAACATGGTGGTAGGGGTGATGATTTTGGTGCCGAACCTCTGCATCAAGGAGGTGATGGTGATGAACATTTTGGTCTGCGCAGTATGTCATCGCCTTGTGATGATAAAAGTTCTGTGAAAAGTATGTATAGTCAAGAGTTTGCTTTCTGTGATAAAGTCAAGGAGAAATTACGAAACCCTGATGATTATCAGGAATTTTTGAAGTGCCTTCACATCTATAGCAGGGAAATAATTACGCGAGAAGAATTGCAGACATTGGTGGGTGATTTACTGGGAAAATATCCTGACCTTTTGGAGGGGTTCAATGAATTTTTGGCAAGATGTGAGAAGAATGATGGATTCCTCGCTGGTGTAATGAATAAAAAATCCTTATGGAATGAAGGTCATGCATCAAAGTCAGTGAAGGCAGAAGAGCGGGATAGAGATAGAGATCGTGGTCGTGGTCGGGATGATGAGGTTAAAGAAAGGGATCGTGAATACCGAGAAAGGGACAGATCTGCTGCCATTGCCAACAAGGATGCTTCAGGTTCCAGGATGTCTATATTATCCTCCAAGGATAAGTATATGTACAAACCTATAAATGAGTTGGACCTATCTAACTGTGAGAAATGCACTCCTAGTTACCGGCTCCTACCAAAAAATTACCCGATACCTATGGCTAGCCAGAGAACAGAGCTTGGTGCTGAAGTATTGAATGATCATTGGGTGTCTGTGACATCTGGAAGTGAAGATTATTCTTTTAAACACATGCGCAAAAACCAGTACGAAGAGAGCTTGTTTAGATGTGAAGATGACAGATTTGAGCTTGATATGCTGTTAGAGTCCGTGAATGCAACCACAAAGCGAGTAGAAGAGCTCCTAGAAAAGATCAATAATAATATAATCAAAGCAGAAAGTCCAATCCAAATTGAGGAGCACTTAACAGCTTTAAATCTAAGGTGCATTGAACGTTTATATGGTGACCATGGGCTTGATGTAATGGAAGTGTTGAGAAAGAATGCACCTTTAGCTTTGCCAGTTATATTGACCCGCTTGAAGCAGAAACAGGAAGAGTGGGCAAGGTGTCGTGCTGATTTTAACAAAGTTTGGGCTGAAATATATGCTAAGAACTATCACAAATCCCTTGATCATCGAAGCTTCTACTTTAAGCAACAGGACATGAAGAGCTTGAGCACTAAAGCCTTGTTGGCAGAAATTAAAGAAATTAGTGAGAAGAAACGTAAAGAAGATGATGCTATTCTTGCAATTGCTGCTGGAAATAGACAGCCCATTCATCCAAATTTGGAATACGAGTTTTCTGACCCAGATATTCATGAGGATCTGTATCAGCTCATAAAATATTCATGTGGAGAAGTTTGTACGACTGAGCCGTTAGATAAAGTTATGAAAATTTGGACAACATTTATAGAGCCCATGCTTGGTGTTCCTTCTCGGCCACAAGGTGCTGAGGATACAGAAGATGTTGTCAAGGCTAAGAACAATTCCGTCAAAAGCGGTTCTGCAATTGGTGCAGAGAGTAATGGTAGTCCAGGTAGTGGTGCTACCATAATGAATTCTAAACAATTAAGTAGTTCTAGAAATGAGGATGAGAGTATTCCATTAGAACAGTCAAACTCTTACAAAGCATGGCAAATGAATGGAGATGGTGGGGTTAAGGAAGACAATCGTGTTGATACGGACCATACCACTCGTAAGACTGAAACTTTGGGCAGCAGTACACAGCTTTGTAAAATGCAAGCTAGTGCATCTATGCCTGATGGAGGATCAGGATTCAATAAGCAAGAGCATCCTAATGATCGGTTAGTGAATGCTAGTGCCTCACTTTCCTCTGGAATGGAGCGCAGTAATGGAAGAATATGCACTGATAATGCATCAGGGCTTACTCAATCTAGACCCGCTGTTGAGGGAGCACTTAATTTACCTTCATCAGAGGGTGGTGATTCCACTAGACTAGGAGCATCTGCAAATGGGACCCTCACTGAAGGCACAAAAGTTCAAAGATACCAAGAAGAATCAGTTGGACACTTAAAGGGTGAAAGAGAAGAGGGTGAATTATCTCCGAATGGAGATTTTGAGGAGGATAACTTTGCAGTGTACAGAGATGCTGGTTTGGAGGCAACGAGTAAAGGAAAGGATGGCGGTATGGTTCAACAATACCAAAATAGACATGGAGAAGAAGTTTGTGGTGAAGCTGGAGGAGAAAATGATGCTGATGCTGATGACGAAGGTGAAGAAAGTCATCAAAGGTCATTAGAGGACAGTGAAAATGCTTCTGAAAATGGGGACGTTTCTGGTAGTGAGTCTGCTGATGGTGAGTGTTCTCGAGAAGAGCATGAAGATGGTGAACACAAGGCTGAGAGTGAAGGTGAAGCTGAAGGGATGGCCGATGCCAATGATGTTGATGGAGATGGATCTTTGTTGCCATTTTCCGAACGCTTTCTACTAACTGTAAAGCCTCTGGCAAAGTATGTTCCTGCAGCTTTGCATGATAAAGGAGGGAGTTCTCAGATTTTTTATGGAAACGACTCCTTTTATGTGCTTTTTAGACTTCACCAGACATTATATGAGAGGATACAATCAGCAAAGATCAACTCTTCATCTGCTGAAAGAAAATGGAAGGCTTCAAATGAAACAAATTCTACTGATCAGTATGGCAGGTTCATGAATGCCCTTTACAGTTTACTGGATGGTTCTTCTGACAATACAAAATTTGAGGATGACTGTAGGGCTGTTATTGGAACTCAATCTTATGTCTTATTCACTTTAGACAAGCTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCAACTGATGAGATAGATAACAAGCTTCTCCAACTTTATACATATGAGAAATCAAGAAAACCAGGAAGATTTGTGGACAGAGTTTATCATGAAAATGCCCGTGTTCTTCTTCATGATGAGAGCATGTATAGGATAGAATGTTCATCATCCCGATTATCTATTCAACTGATGGACTGTGGACATGATAAGCCTGAACTGACTGCCGTGTCCATGGACCCAAATTTTTCAGCCTATCTGCATAGTGACTTCCTCTCTGTTGTTCCTGAAAAAAAGGAAAGGTCAAGGATTTTCCTAAAGAGGAATAAACGCAGAAATGCACCTAGTGATGAGTATTCAAGCCCAGCCTTCGAAGGACTACAAGTTAGTAATGGTCTGGAGTGTAAAATAGCTTGCAGTTCATCCAAGGTTTCATATGTTTTAGATACCGAAGACTTTTTGTTTCGGATGAGTAAGAGAAGGAAAACTTTGCATCAGAATGGGTCATGCCATGAACAGGCAAAGTCCTCAAACACTTCTGAAAAAGTAGTTTTGAAGTAG 4194 0.4137 MVSSRGEAPGQPQMIGGGSQKLTTNDALLYLKAVKEMFHDKREKYDDFLEVMKNFKAQRIDTAGVIARVKELFKGHKDLILGFNTFLPKGYEITLPLEDEQPPQKKPVEFEEAINFVNKIKARFQGNDHVYKSFLDILNMYRKENKSITEVYQEVAVLFQDHQDLLVEFTHFLPDASAAASAHYAQSARNSLLHDRSSVMPAVGQMRPDKRERIMSHDRDHSVDHLDPDDKGYMRTENELRRRGEKEKDHREDRDRKERKYDDGAYEHDNSQEYNMRNFPHKPKHGGRGDDFGAEPLHQGGDGDEHFGLRSMSSPCDDKSSVKSMYSQEFAFCDKVKEKLRNPDDYQEFLKCLHIYSREIITREELQTLVGDLLGKYPDLLEGFNEFLARCEKNDGFLAGVMNKKSLWNEGHASKSVKAEERDRDRDRGRGRDDEVKERDREYRERDRSAAIANKDASGSRMSILSSKDKYMYKPINELDLSNCEKCTPSYRLLPKNYPIPMASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNATTKRVEELLEKINNNIIKAESPIQIEEHLTALNLRCIERLYGDHGLDVMEVLRKNAPLALPVILTRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDMKSLSTKALLAEIKEISEKKRKEDDAILAIAAGNRQPIHPNLEYEFSDPDIHEDLYQLIKYSCGEVCTTEPLDKVMKIWTTFIEPMLGVPSRPQGAEDTEDVVKAKNNSVKSGSAIGAESNGSPGSGATIMNSKQLSSSRNEDESIPLEQSNSYKAWQMNGDGGVKEDNRVDTDHTTRKTETLGSSTQLCKMQASASMPDGGSGFNKQEHPNDRLVNASASLSSGMERSNGRICTDNASGLTQSRPAVEGALNLPSSEGGDSTRLGASANGTLTEGTKVQRYQEESVGHLKGEREEGELSPNGDFEEDNFAVYRDAGLEATSKGKDGGMVQQYQNRHGEEVCGEAGGENDADADDEGEESHQRSLEDSENASENGDVSGSESADGECSREEHEDGEHKAESEGEAEGMADANDVDGDGSLLPFSERFLLTVKPLAKYVPAALHDKGGSSQIFYGNDSFYVLFRLHQTLYERIQSAKINSSSAERKWKASNETNSTDQYGRFMNALYSLLDGSSDNTKFEDDCRAVIGTQSYVLFTLDKLIYKLVKQLQAVATDEIDNKLLQLYTYEKSRKPGRFVDRVYHENARVLLHDESMYRIECSSSRLSIQLMDCGHDKPELTAVSMDPNFSAYLHSDFLSVVPEKKERSRIFLKRNKRRNAPSDEYSSPAFEGLQVSNGLECKIACSSSKVSYVLDTEDFLFRMSKRRKTLHQNGSCHEQAKSSNTSEKVVLK 1397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g0946 1397 ProSiteProfiles PAH domain profile. 20 90 IPR003822 GO:0006355
Alju09g0946 1397 MobiDBLite consensus disorder prediction 1376 1397 - -
Alju09g0946 1397 MobiDBLite consensus disorder prediction 414 452 - -
Alju09g0946 1397 ProSiteProfiles PAH domain profile. 322 391 IPR003822 GO:0006355
Alju09g0946 1397 Pfam Sin3 family co-repressor 485 576 IPR013194 -
Alju09g0946 1397 ProSiteProfiles PAH domain profile. 106 176 IPR003822 GO:0006355
Alju09g0946 1397 MobiDBLite consensus disorder prediction 834 848 - -
Alju09g0946 1397 Gene3D Paired amphipathic helix 320 393 IPR036600 GO:0006355
Alju09g0946 1397 FunFam Paired amphipathic helix protein Sin3 26 88 - -
Alju09g0946 1397 SUPERFAMILY PAH2 domain 102 175 IPR036600 GO:0006355
Alju09g0946 1397 Gene3D Paired amphipathic helix 26 88 IPR036600 GO:0006355
Alju09g0946 1397 MobiDBLite consensus disorder prediction 920 976 - -
Alju09g0946 1397 Gene3D Paired amphipathic helix 104 177 IPR036600 GO:0006355
Alju09g0946 1397 MobiDBLite consensus disorder prediction 1052 1074 - -
Alju09g0946 1397 MobiDBLite consensus disorder prediction 920 950 - -
Alju09g0946 1397 MobiDBLite consensus disorder prediction 781 827 - -
Alju09g0946 1397 MobiDBLite consensus disorder prediction 195 320 - -
Alju09g0946 1397 Pfam C-terminal domain of Sin3a protein 1121 1365 IPR031693 -
Alju09g0946 1397 MobiDBLite consensus disorder prediction 951 968 - -
Alju09g0946 1397 SUPERFAMILY PAH2 domain 19 89 IPR036600 GO:0006355
Alju09g0946 1397 SMART hdac_interact2seq4b 483 583 IPR013194 -
Alju09g0946 1397 MobiDBLite consensus disorder prediction 1380 1397 - -
Alju09g0946 1397 MobiDBLite consensus disorder prediction 1025 1039 - -
Alju09g0946 1397 FunFam Paired amphipathic helix SIN3-like protein 105 176 - -
Alju09g0946 1397 PANTHER SIN3B-RELATED 20 1265 IPR039774 GO:0003714
Alju09g0946 1397 Pfam Paired amphipathic helix repeat 344 388 IPR003822 GO:0006355
Alju09g0946 1397 Pfam Paired amphipathic helix repeat 129 173 IPR003822 GO:0006355
Alju09g0946 1397 Pfam Paired amphipathic helix repeat 43 87 IPR003822 GO:0006355
Alju09g0946 1397 MobiDBLite consensus disorder prediction 781 855 - -
Alju09g0946 1397 Coils Coil 552 576 - -
Alju09g0946 1397 MobiDBLite consensus disorder prediction 412 452 - -
Alju09g0946 1397 MobiDBLite consensus disorder prediction 206 305 - -
Alju09g0946 1397 FunFam Paired amphipathic helix protein SIN3 320 393 - -
Alju09g0946 1397 SUPERFAMILY PAH2 domain 322 389 IPR036600 GO:0006355
Alju09g0946 1397 MobiDBLite consensus disorder prediction 1010 1085 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g0946 Alju-ChrAlju09 30107777 30118367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g0946 16 125 WRKY Transcription Factor Family AT4G12020 50.909 2.75e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Alju09g0946 Sin3a_C 1.8e-57 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g0946 09 30107777 30118367 Alju12g1346 12 34639481 34648516 CCT
Alju09g0946 09 30107777 30118367 Alju09g0946 09 30107777 30118367 ECH