Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g0918 ATGGACCAACAAGTTCTTATGGATGAAAACTTTCCACTCTTCTCCAAGTCTCATAAACCCTCAAAAAAACACTTGTTGGCTGCCCCAGCTGCTACAGCCACCACCTCTGCTGCCACTAAAGACATTAACTTTGATAGCCAACACCTTGGAAAGTCAGATGACGCAGTTCTTGATTCCACCAATCCTAGTACTTTTGCAGAGCTTGGACTTGCTGAATGGGCTGTGAAGACTTGCAAAGAGCTCGCGATGCGCAAGCCTCAACAGGTCCAATTACATTGCATCCCGAAGATTCTAGATGGTCGCCATGTGCTTGGCATTGATGAGACAGGAAGTGGTAAGACTGCGGCATTTGCTCTACCAATTCTTCACAGACTGGGTGAGCATCCTTTTGGGGTTTTTGCTTTGGTTTTGACGCCAACAAGGGAGTTAGCATATCAACTTGCGGAGCAATTTAGGGCATTGGGTTCATGCTTGCATGTGCGGATAGCTGTGGTGGTTGGAGGAATGGATATGTTGAAGCAAGCCAAGATTTTAACATCCAGGCCGCATGTTGTGATTGCCACACCAGGAAGGATCAAGGTTTTGCTTGAGGATAATCCTGATATTCCTCCAGTTTTTTCTAGAACTAAGTTCCTTGTCTTGGATGAAGCAGATCGGGTTCTTGATGTCGGCTTTCAGGAGGATTTGAAGTTGATCTTTCAGTGCATACCTGAAAGTCGGCAAAACCTATTTTTTTCTGCAACTACGACAAGTAATCTACAGAAGCTGCGTGAGCGTTACCAAGACAAGCTCTATGTCTATGAGGCATATGAAGGCCTGAAAACAGTTGAGACGCTTAAGCAACAAATTATATTTGTTCCCAACAAAGTCAAGGAGGTTTATTTAATGCATATATTGTCCAAAATGGAAGATATGGGCATTCGTTCTACCATTGTATTTTTCTCTACATGCAGAGATTGTCATCGTTTAAATTTAATGCTAAAAGTACTCGATCAAGAAGCTGCAGCTCTTTATTCATTCAAATCACAGACTCAGAGACTTGAAGCACTTCATCAATTTAAATCAGGAAAGGTTTCTATACTGCTTGCAACTGATGTTGCCAGCCGAGGTTTGGACATTCCTACAGTTGATCTAGTTATCAATTATGATGTCCCAAGGTTTCCTCGGGATTATGTCCATCGTGTTGGTCGAACTGCAAGAGCAGGTAGAGGAGGACTGGCTGTGAGCATTGTTACCCAGAATGATGTTAATCTCATTCATGAAGTAGAAGCTCTTATTGAAAGGCAACTTGAGTTGGTTGAGTACAAGGAGAATGAGGTGCTTACTCTGATGAAAAAGGTTTTCAGTGCTAAAAATGTTGCCGAAATGAAAATGTTGGATGATGGCTTTGAGGAGAAAGCAGAAGAGCGGAAAAAACAGAAACTAAAAATGTTAGCAGAAAAAGGATTATTAAAGAAAGAGAGCAAAAAAAGGAAAAGAAATAAAGGCATCAAGGAAGGAGGAGAAAAAAACAAAGAGGAAGTGAAACGTTACCAGCGAAGAGGAGGTGAATTAGAGTTTTTGATGAATTTAAGTGCGGAAAAAAGTGAAGGCTGA 1596 0.4167 MDQQVLMDENFPLFSKSHKPSKKHLLAAPAATATTSAATKDINFDSQHLGKSDDAVLDSTNPSTFAELGLAEWAVKTCKELAMRKPQQVQLHCIPKILDGRHVLGIDETGSGKTAAFALPILHRLGEHPFGVFALVLTPTRELAYQLAEQFRALGSCLHVRIAVVVGGMDMLKQAKILTSRPHVVIATPGRIKVLLEDNPDIPPVFSRTKFLVLDEADRVLDVGFQEDLKLIFQCIPESRQNLFFSATTTSNLQKLRERYQDKLYVYEAYEGLKTVETLKQQIIFVPNKVKEVYLMHILSKMEDMGIRSTIVFFSTCRDCHRLNLMLKVLDQEAAALYSFKSQTQRLEALHQFKSGKVSILLATDVASRGLDIPTVDLVINYDVPRFPRDYVHRVGRTARAGRGGLAVSIVTQNDVNLIHEVEALIERQLELVEYKENEVLTLMKKVFSAKNVAEMKMLDDGFEEKAEERKKQKLKMLAEKGLLKKESKKRKRNKGIKEGGEKNKEEVKRYQRRGGELEFLMNLSAEKSEG 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g0918 531 Gene3D - 30 267 IPR027417 -
Alju09g0918 531 SMART helicmild6 321 402 IPR001650 -
Alju09g0918 531 CDD SF2_C_DEAD 279 411 - -
Alju09g0918 531 Gene3D - 273 451 IPR027417 -
Alju09g0918 531 Pfam DEAD/DEAH box helicase 88 256 IPR011545 GO:0003676|GO:0005524
Alju09g0918 531 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 94 267 IPR014001 -
Alju09g0918 531 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 51 508 - -
Alju09g0918 531 MobiDBLite consensus disorder prediction 482 510 - -
Alju09g0918 531 SMART ultradead3 82 282 IPR014001 -
Alju09g0918 531 Pfam Helicase conserved C-terminal domain 307 402 IPR001650 -
Alju09g0918 531 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 213 221 IPR000629 -
Alju09g0918 531 MobiDBLite consensus disorder prediction 494 510 - -
Alju09g0918 531 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 278 441 IPR001650 -
Alju09g0918 531 CDD DEADc_DDX49 65 268 - -
Alju09g0918 531 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 419 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g0918 Alju-ChrAlju09 29221428 29228878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g0918 36 419 Eukaryotic Initiation Factors Gene Family AT3G13920 31.000 3.10e-54 187