Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g0917 ATGTCGGTTCTAATCGTCACGAGCTTAGGAGACATAGTGGTAGATTTGTACTCCGATAAGTGCCCCTTGACGAGTAAAAATTTCTTGAAGCTTTGCAAGATGAAATACTACAATGGATGTCTATTTTACACAGTTCAGAAAGATTTCACTGCTCAGACTGGTGATCCAACTGGAATAGGGAGTGGTGGTGATTCTGTTTACAAATTTCTTTATGGTGATCAAGCTCGCTTTTTTAGTGATGAGATTCATATTGATTTAAAGCATTCTAAGACTGGTACAGTTGCCATGGCTAGTGCTGGAGAGAACCTGAATGCTTCCCAATTCTACATCACTCTGCGTGAAAATCTTGATTACCTTGATGGAAAGCACACGGTTTTCGGTGAGGTAGCTGAAGGACTTGACACATTGACTAGAATAAATGAGGCTTACGTGGATGAGAATGGGAGGCCTTATAAAAATATCCGAATCAAGCACACTTACATCTTAGATGATCCTTTTGACGATCCTCCTCAGCTAGCTGATTTTATTCCTGACGCTTCACCAGAAGGAAAGCCAAAGGATGAGATTATTGATGAAGTGCGACTTGAAGATGATTGGGTGCCCATGGATGAACAATTAGATGCAGCAGAGCTTGAGGAGGTTATTAGGTCAAAGGAAGCACATTCTAGGGCTGTTGTACTTGAGAGTGTAGGAGATATTCCTGATGCTGAGATCAAGCCTCCTGACAACGTGCTATTTGTTTGTAAATTGAACCCAGTTACTGAGGATGAGGACTTGCATACTATATTTTCACGCTTTGGGACTGTTGTATCGGCTGAAATCATCCGTGATAACAAGACTGGTGACAGTTTATGCTATGCTTTCATAGAGTTTGAGGACAAGCAGGCATGTGAACAAGCATATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATACATGTGGATTTCAGTCAGAGTGTGGCAAAATTATGGTCACAATATAGGCGCAAAGATCAAACTGGTAAAGGTAATGGCTGCTTCAAATGTGGTTCTTCAGATCATATTGCCAGAGATTGCACTGAGGATGCTAAGAACCAACCAACAAAATACATCTTGAAAGACAACAATGCCCAACGGGGTGGGGATGATGCAAGGTATGAAATGGTTTTCGATGGAGATGGCGAAGAGAGTCCAAGGCAAAGAAAGGGACACAGAAGGCATGACAAGGATGGGCCAATTGAGAGAAAAAGTAGGGGTCACAGGGATCAAGAGATGGTAGGCTCAGACAGCAGAGATCGGTATGGTGATAGAAACAGAGGAGAAATATATGAAAGAGGCGCCAGAGATGTGGATTCTCATGTGGAGAGAAAAGATAGGGATAAGTATATGGATAGACGTAGAGATGATGATGGCTATGGCCGGAAAGATGATCGAGACTCTAAGAAGAGATACAATGATGATGGCCGGAAAGATGATCGAGACTCTAGGAAGAGATACGAGGACGATAGCCGGACAGAAAGAAGGAGCAGTGCAGATTATCGGAGAAAAACGGATCCTAGCCATGTGGAGAGAAGGGATGACAGGGACAAGGAGGAGGGTAGAGATAGGGAGAAGAGAAAGAAGGATGGTTCAGTGGAAGATGGCCATGAAGACAGGAGGAGAATGGATGAGAGAGATCATAGGATGAAGCAGGAAGACCGAGGCAGGCAAGACTCGAAGAATGTGTCCAGAGAAAGAAAGAGAGATGCAGATGATGATGAAGATTACAGACGTCGAAGGGAAGAGCGTGGCCAGAGAAGGAAAGATGTAGAGTTTGATGATGATCGGCCTAGGAGACATCGTAGTGACAAGAGATGA 1842 0.4338 MSVLIVTSLGDIVVDLYSDKCPLTSKNFLKLCKMKYYNGCLFYTVQKDFTAQTGDPTGIGSGGDSVYKFLYGDQARFFSDEIHIDLKHSKTGTVAMASAGENLNASQFYITLRENLDYLDGKHTVFGEVAEGLDTLTRINEAYVDENGRPYKNIRIKHTYILDDPFDDPPQLADFIPDASPEGKPKDEIIDEVRLEDDWVPMDEQLDAAELEEVIRSKEAHSRAVVLESVGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDNKTGDSLCYAFIEFEDKQACEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRKDQTGKGNGCFKCGSSDHIARDCTEDAKNQPTKYILKDNNAQRGGDDARYEMVFDGDGEESPRQRKGHRRHDKDGPIERKSRGHRDQEMVGSDSRDRYGDRNRGEIYERGARDVDSHVERKDRDKYMDRRRDDDGYGRKDDRDSKKRYNDDGRKDDRDSRKRYEDDSRTERRSSADYRRKTDPSHVERRDDRDKEEGRDREKRKKDGSVEDGHEDRRRMDERDHRMKQEDRGRQDSKNVSRERKRDADDDEDYRRRREERGQRRKDVEFDDDRPRRHRSDKR 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g0917 613 Gene3D - 1 172 IPR029000 -
Alju09g0917 613 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Alju09g0917 613 Gene3D - 333 415 - -
Alju09g0917 613 SUPERFAMILY Cyclophilin-like 1 176 IPR029000 -
Alju09g0917 613 Pfam Zinc knuckle 340 356 IPR001878 GO:0003676|GO:0008270
Alju09g0917 613 MobiDBLite consensus disorder prediction 383 613 - -
Alju09g0917 613 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Alju09g0917 613 CDD cyclophilin_RRM 4 169 IPR035538 -
Alju09g0917 613 SUPERFAMILY RNA-binding domain, RBD 229 339 IPR035979 GO:0003676
Alju09g0917 613 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Alju09g0917 613 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Alju09g0917 613 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Alju09g0917 613 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Alju09g0917 613 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Alju09g0917 613 SMART c2hcfinal6 340 356 IPR001878 GO:0003676|GO:0008270
Alju09g0917 613 SMART rrm1_1 244 317 IPR000504 GO:0003723
Alju09g0917 613 CDD RRM_PPIL4 240 322 - -
Alju09g0917 613 ProSiteProfiles Zinc finger CCHC-type profile. 341 356 IPR001878 GO:0003676|GO:0008270
Alju09g0917 613 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 159 IPR002130 GO:0000413|GO:0003755
Alju09g0917 613 FunFam Peptidyl-prolyl cis-trans isomerase 182 323 - -
Alju09g0917 613 Gene3D - 195 325 IPR012677 -
Alju09g0917 613 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 525 IPR035542 -
Alju09g0917 613 SUPERFAMILY Retrovirus zinc finger-like domains 329 361 IPR036875 GO:0003676|GO:0008270
Alju09g0917 613 FunFam Peptidyl-prolyl cis-trans isomerase 1 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g0917 Alju-ChrAlju09 29215070 29219571 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g0917 7 166 U-box Gene Family AT5G67530 38.750 2.19e-29 121