Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g0875 ATGGCCGAAGAAGGGTATATGCAACAGCTCAGATCTAAGGCAACAGAGTTTCTTCTAAGAGAAGAATGGAAGGAATCCATCGAAGCCTATTCAAACTTCATCACTATCTGCCAAAACCAAATCGTCCATTCCCAAAACTATCCAGACTCAGATGAGTTTCAAAGGCTGCGAAAATCCCTCTGCTTAGCCCTTTCAAACAGAGCCGAAGCAAGATCGAGACTGAAAGAGTTTCACTCTGCGTTGGAAGATTGTGATTTAGCTTTGGTAATCGACGAGACCCATTTCAAGACTCTGATCTGCAGAGGTAAGATATTGCTCAATCTCAATATGTATTATGCGGCTTTGGAATGCTTCAGAGTCGCTCTTCGTGATCCCCAGGCCAATGGGAACTCTGAAAACCTAAATGGGTATGTCGAGAAATGTAAAAAACTCGACTTTCTCTCCAGAACTGGATCTCTGGACCTTTCCGATTGGGTTTCAAATGGGTTTCGAGGGAAGTCTCCAGAACTTGCAGAGTTTATTGGTTCTGTGGAGATCATGAAATCTGAGATCAGTGGACGTGGGTTGTTTGCAACTAAGAACATCGATGCAGGGGGATTGGTTTTGATCACAAAGGCAATAGCGATGGAAAGGAGTGTATTGGGGGGAAAAGAACTGAGTGAGGAAGCTCAATTAGTGATGTGGAAGAATTTCATTGATAAAGTTACAGACTTCGTTAGAAAATGTCACAGAACAAGCAATTTGATCTGCCAATTGTCAAGTGGGGAAGATGAAGATTCACTTGAGGTGCCTGATATAGCCCTCTTTAAACCAGGAACAGAGTTGAAGAACAAGAACAATCAACCCAGTGAGACTGAGGAGATTGATAAGGGTGAGTTACTAGCCATATTGGATGTGAATTCTCTAACTGAAGATTCAGTTTCAGCCAATGTATTAGGGAAGAAGAACAATGATTATTATGGTGTTGGCCTATGGCTATTACCTTCCTTCATCAACCATTCTTGTTACCCAAATGCAAGGAGGTTACATGTGGGTGACTATCTGATAGTTCATGCTTCTAAAGATATCAAAGCCGGTGAAGAAATTACCTTTGCCTATTTGGACCCACTTTCTACATTACACAAGCGCAAAGAGATGTCAATGACATGGGGTATCCAATGTAGGTGTAAGAGATGCAAGTTTGAGTCAGAAATCATGTGCAAACAAGAGATGAGAGAGATTGAGATTGGTCTTGAAAGAGGGATGGATGTGGGTAGTGCAGTGTACAAATTAGAAGAAGAAATGAAGAGATGGAAAGTGAGAGGGAAAGAGAAAGCCTATTTGAGGGCATCATTTTGGTCTGCATATTCTGAGGTTTATAGGTCTGATAGATTCATGAAGAGGTGGGGACGGCGTATTCCGGCCATGGAAGCCGTCGTTTATAGCATCATAGATGTTATAGGAGGAGATGAGAGGCTGCTTAAGATTCAAATGGAGGAGATGAAGAAAAACACAGGTGGTGGTGGACTTGTGGAGATGGAGAAAGCTTTTAAACTGGCAAGAGAAGTGTATGGGAAGGTGGTGAAGAAGCAGGCCATGAGGACTCTTCTTGAGCTTTGTGTTGCAACTAGTGAATGA 1617 0.4242 MAEEGYMQQLRSKATEFLLREEWKESIEAYSNFITICQNQIVHSQNYPDSDEFQRLRKSLCLALSNRAEARSRLKEFHSALEDCDLALVIDETHFKTLICRGKILLNLNMYYAALECFRVALRDPQANGNSENLNGYVEKCKKLDFLSRTGSLDLSDWVSNGFRGKSPELAEFIGSVEIMKSEISGRGLFATKNIDAGGLVLITKAIAMERSVLGGKELSEEAQLVMWKNFIDKVTDFVRKCHRTSNLICQLSSGEDEDSLEVPDIALFKPGTELKNKNNQPSETEEIDKGELLAILDVNSLTEDSVSANVLGKKNNDYYGVGLWLLPSFINHSCYPNARRLHVGDYLIVHASKDIKAGEEITFAYLDPLSTLHKRKEMSMTWGIQCRCKRCKFESEIMCKQEMREIEIGLERGMDVGSAVYKLEEEMKRWKVRGKEKAYLRASFWSAYSEVYRSDRFMKRWGRRIPAMEAVVYSIIDVIGGDERLLKIQMEEMKKNTGGGGLVEMEKAFKLAREVYGKVVKKQAMRTLLELCVATSE 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g0875 538 SUPERFAMILY TPR-like 8 124 IPR011990 GO:0005515
Alju09g0875 538 Gene3D Tetratricopeptide repeat domain 5 145 IPR011990 GO:0005515
Alju09g0875 538 Gene3D SET domain 273 423 IPR046341 -
Alju09g0875 538 SMART set_7 175 373 IPR001214 GO:0005515
Alju09g0875 538 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 6 532 - -
Alju09g0875 538 CDD SET_SMYD 285 392 - -
Alju09g0875 538 ProSiteProfiles SET domain profile. 175 367 IPR001214 GO:0005515
Alju09g0875 538 SUPERFAMILY SET domain 176 393 IPR046341 -
Alju09g0875 538 Pfam SET domain 186 366 IPR001214 GO:0005515
Alju09g0875 538 SMART tpr_5 95 128 IPR019734 GO:0005515
Alju09g0875 538 SMART tpr_5 61 94 IPR019734 GO:0005515
Alju09g0875 538 SMART tpr_5 7 40 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g0875 Alju-ChrAlju09 25862697 25864313 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Alju09g0875 SET 4.7e-15 No_clan