Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g0872 ATGGGTAGGTCACCTTGCTGTGAGAAAGTGGGGTTGAAGAAGGGACCTTGGACTCCTGAAGAAGACCAGAAGCTCGTCGCCTACATTGAACAACATGGCCACGGAAGCTGGCGTGCATTGCCTTCCAAAGCTGGACTTGAGAGATGTGGGAAAAGTTGCAGGCTGAGGTGGACCAATTATCTCAGACCTGATATTAAACGAGGAAAGTTTAGCTTGCAAGAAGAGAGAACTATTATTCAACTTCATGCCCTTCTTGGAAACAGATGGTCAGCCATAGCGGCTCACTTGCCTAAGAGAACTGACAATGAGATCAAGAACTACTGGAACACTCATCTTAAGAAGAGGCTCGCCAAAATGGGGATCGACCCGACCACACACCGGCCTAAAGTTGACGTCGGCGGACCAGCGAGCTCGAGCCTTAGCCACATGGCTCAGTGGGAGAGTGCCCGGCTTGAAGCCGAAGCCAGGCTTGTCAGAGAGTCCAAGCTCCAGCTTGGCTCGTCATCGTCTTTATTCCCCCCCGCTCAACCGGCTCGGCTCGTCCTCAACAGAATCTCGGCTCGGCCGTCTGTACCGCCGTGCTTAGACGTCCTCAAAGCATGGCAGAACTCATGGACGTCGTTGCCGACCACAGAAGACAAAAATACCAGAATGCATAGCATGTACGCCCTGATGATCGCCGCCGCTGACGAGAACCTTGAGTCGCCGACGTCCACCTTGAGCTTCCCGGAACCCATGTTACCACCTAGCTCCACCACCACCGCCACCACAACCACCGCAGGAATATTACCCATTAGTGAAAAAATGGTCATCCCTCCGGCCACCAACATTACCACGGTTAATTCTGTCCAAGCACCCACTTCTGGAATCGAGCCATGGGACACCGAGGTGGCGGTCACCGGAGATAGAAGAACGACCACGACAAATTTACAAGACGACGACATTATGGTGGCGGTGGAGGCATTTATGGGAGAAAGGTACAAGAACGTACAAGTCAATTTACAAGAAGTACTGTCGTCAAACAGTATAATGGCTGGTTTAAACAGCGAAGATAACGATGATGTGCTTGTTTTTGAATCCAACGAGAATATGGACAACTTGGGTTTCGTGGATATTAATGGCGAAGAAGCAACCATGATTTGTGGAAACACAAACTTTGAGGAGAAGAATCATTACTGGAACAGCATATGTAGTACCCAAACATGGTGA 1209 0.5029 MGRSPCCEKVGLKKGPWTPEEDQKLVAYIEQHGHGSWRALPSKAGLERCGKSCRLRWTNYLRPDIKRGKFSLQEERTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKRLAKMGIDPTTHRPKVDVGGPASSSLSHMAQWESARLEAEARLVRESKLQLGSSSSLFPPAQPARLVLNRISARPSVPPCLDVLKAWQNSWTSLPTTEDKNTRMHSMYALMIAAADENLESPTSTLSFPEPMLPPSSTTTATTTTAGILPISEKMVIPPATNITTVNSVQAPTSGIEPWDTEVAVTGDRRTTTTNLQDDDIMVAVEAFMGERYKNVQVNLQEVLSSNSIMAGLNSEDNDDVLVFESNENMDNLGFVDINGEEATMICGNTNFEEKNHYWNSICSTQTW 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g0872 402 CDD SANT 69 112 IPR001005 -
Alju09g0872 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Alju09g0872 402 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Alju09g0872 402 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Alju09g0872 402 CDD SANT 16 61 IPR001005 -
Alju09g0872 402 Gene3D - 69 116 - -
Alju09g0872 402 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Alju09g0872 402 SMART sant 66 114 IPR001005 -
Alju09g0872 402 SMART sant 13 63 IPR001005 -
Alju09g0872 402 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 231 - -
Alju09g0872 402 FunFam MYB transcription factor 69 116 - -
Alju09g0872 402 Gene3D - 13 66 - -
Alju09g0872 402 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Alju09g0872 402 FunFam MYB-related transcription factor 13 66 - -
Alju09g0872 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Alju09g0872 402 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Alju09g0872 402 MobiDBLite consensus disorder prediction 235 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g0872 Alju-ChrAlju09 25346168 25348222 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g0872 1 249 MYB Transcription Factor Family AT3G01140 59.846 4.60e-101 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju09g0872 Myb_DNA-binding 3.2e-15 CL0123