LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju09g0864	ATGCAAAATATGAAGCAGAGACATCATCAGCAATACAAGGAAGAATCCAAGAAGAAGGAGCGTCACATTGTCTCTTGGAGTCAAGAGGAGGATGATATACTTAGAGAGCAGATTAGCATTCATGGAACAGACAATTGGACAATTATTGCATCTAAATTCAAGGATAAAACGACAAGACAATGCAGGAGAAGGTGGTACACATACTTGAATTCTGATTTCAAGAAAGGAGGGTGGTCACCAGAGGAAGATATGCTATTATGTGAGGCTCAGAAGATATTTGGCAACAGATGGACAGAAATAGCTAAGGTGGTTTCAGGCAGAACGGATAATGCTGTGAAAAATCGGTTCACCACACTTTGCAAAAAGAGAGCAAAATATGAAGCCTTGGCCAAAGAGAACAACCCTTCATTCATCAATTCAAATAACAAAAGGATCATTTTCCAACAAGTTCACAGTGCAAATACAGTGTCAGAGGTTGCGGCATCCATTAAGAAGATGAGGGCCCACATCCCTGATGATGCAGCAAGGATCACCTATGGAGACAGATCTCATAAACAATTTGGAACACCAGTTAGCCAGCAACCTAGAGTGCCATTTGCAGTATTATCTAATTTCAACGATAACAGCTTGCAAGACCGACATCCTATCTGCAGTGCCAAGTTCAATAGTTACGCCCAAAACAACAAGACTCAAGGAACATTCCTCAAAAAGGATGATCCAAAGATCGGTGTGTTGATGCAGCAAGCAGAATTATTAAGCTCACTAGCAGTGAAAGTTAATACAGAGAACGTGGACCAGAGTCTTGAGAATGCATGGAAGGTTCTGCAAGATTTTCTGAACCGAACAAACAAATCAGATCTTTCAAGACATAAGATCACAGATTTACAGCTTGAAAATATCAAAAATATGGCGGAGGACATAAAGAGTGGTCATGAGGGGAGCCAACCATATACAAGGCAACCAGAGCTATATGAGGACTCTCCAAGTAGCTCTGAATATAGTACAGGATCAACTATACTGGGCCATTCAGCTGATGATGATTTGGAACATTCACTGCATCAAAATGTTGAAACTGAAGGGAAGCGTACAGAAATTGAGGAGAAAAAAGGAATTAGTAGTTGCGAGAAACAAGTTCTTTGTGCTTCAACGACGGATCAAGATATCTTGCCATCTTGTGAGGAACAGATAAACGACGATTTCATCATTTCTGCCTTGTCAAGTACAGAGTTCAGTTCCCCTATTCAGGTTACTCCTCTGTTCAGATCCTTGGCTGCAGGAATTCCCAGCCCACAGTTTTCGGAAAGTGAAAGGAACTTTCTGATGAAAACACTGGGAATGGAATCCCCATCTCAGAATCAAAGTACAAAAGCCTCACAACCGCCACCCTGCAAAAGAGCCTTACTACAAAGTCTATAA	1416	0.4124	MQNMKQRHHQQYKEESKKKERHIVSWSQEEDDILREQISIHGTDNWTIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFTTLCKKRAKYEALAKENNPSFINSNNKRIIFQQVHSANTVSEVAASIKKMRAHIPDDAARITYGDRSHKQFGTPVSQQPRVPFAVLSNFNDNSLQDRHPICSAKFNSYAQNNKTQGTFLKKDDPKIGVLMQQAELLSSLAVKVNTENVDQSLENAWKVLQDFLNRTNKSDLSRHKITDLQLENIKNMAEDIKSGHEGSQPYTRQPELYEDSPSSSEYSTGSTILGHSADDDLEHSLHQNVETEGKRTEIEEKKGISSCEKQVLCASTTDQDILPSCEEQINDDFIISALSSTEFSSPIQVTPLFRSLAAGIPSPQFSESERNFLMKTLGMESPSQNQSTKASQPPPCKRALLQSL	471

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju09g0864	471	CDD	SANT	78	119	IPR001005	-
	Alju09g0864	471	ProSiteProfiles	Myb-like domain profile.	25	69	IPR001005	-
	Alju09g0864	471	Gene3D	-	12	74	-	-
	Alju09g0864	471	MobiDBLite	consensus disorder prediction	7	24	-	-
	Alju09g0864	471	FunFam	Transcription factor MYB124	18	74	-	-
	Alju09g0864	471	CDD	SANT	25	69	IPR001005	-
	Alju09g0864	471	Pfam	Myb-like DNA-binding domain	26	86	-	-
	Alju09g0864	471	SMART	sant	22	71	IPR001005	-
	Alju09g0864	471	SMART	sant	74	122	IPR001005	-
	Alju09g0864	471	MobiDBLite	consensus disorder prediction	1	24	-	-
	Alju09g0864	471	PANTHER	MYB PROTEIN-RELATED	25	232	-	-
	Alju09g0864	471	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	74	124	IPR017930	-
	Alju09g0864	471	ProSiteProfiles	Myb-like domain profile.	70	120	IPR001005	-
	Alju09g0864	471	FunFam	Transcription factor MYB124	77	145	-	-
	Alju09g0864	471	MobiDBLite	consensus disorder prediction	308	343	-	-
	Alju09g0864	471	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	18	73	IPR017930	-
	Alju09g0864	471	SUPERFAMILY	Homeodomain-like	23	116	IPR009057	-
	Alju09g0864	471	MobiDBLite	consensus disorder prediction	313	341	-	-
	Alju09g0864	471	Gene3D	-	77	146	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju09g0864	Alju-ChrAlju09	23650265	23655059	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju09g0864	64	471	MYB Transcription Factor Family	AT1G14350	51.932	1.81e-126	371

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Alju09g0864		Myb_DNA-bind_6	3.7e-15	CL0123