Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g0843 ATGGCTTTCTTCCCGGCAAATTTCATGCTTCAGACCTCTCACCCAGAAGAGCATCATCATCAGCCTCCTCCTTCTCTCAACTCGCTCCTGACTTCATGTGCTCCACAAGATTATCATCATCATGGGGGGCCTTCTTTTCTAGGTAAGAGATGCATGTCATTTTCAGGAATTGAACTGGCTGAGGAAGCTAATAATGCAGAGGAGGACTTATCAGATGACGGGTCTCAGGCGGGGGAGAAGAAGAGGAGGCTTAACATGGAACAGGTGAAGACACTTGAGAAGAGCTTTGAGCTGGGGAATAAGCTTGAACCAGAGAGAAAAATGCAGCTTGCAAGGGCTCTAGGATTGCAGCCGAGACAGATCGCGATATGGTTCCAAAACAGAAGAGCAAGGTGGAAAACAAAGCAGCTTGAAAAAGACTATGATGTCCTTAAAAGACAATATGATTCCCTCAAGGCAGATAATGATGCTCTTCAAGCTCAGAACCAAAAACTCCAAGCTGAGATATTTGCAGTGAAGAACCGAGAGCCGACCGAGTCGATCAACCTCAACAAAGAAACAGAGGGATCTTGTAGCAACAGAAGCGAGAACAGCTCTGAGATTATCAAGTTTGATATAACAAGAACACCAGCTATTGATGATGATAGCCCTGATCTTTCCACACACCACCAAACTACAAGCATAACACTATTTCCTTCTTCTTCGGCTTCTATAAGGCCTCCTCCTTCTTCTTCAGGAGGAGGAGTAGGAGTGGCCCACCAGCTCTTCCAAGCTTCTTCAACAAGACCAGAGCTTCATCAGTGCCACCGGAAGGTAACCGATCAGATGGTTAAAGAAGAGAATAATTTGAGCAATATGTTTTGTGGGATGGATGATCAATCTGGGTTCTGGCCATGGTTGGAGCACCAACATTTCAATTGA 921 0.4539 MAFFPANFMLQTSHPEEHHHQPPPSLNSLLTSCAPQDYHHHGGPSFLGKRCMSFSGIELAEEANNAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYDSLKADNDALQAQNQKLQAEIFAVKNREPTESINLNKETEGSCSNRSENSSEIIKFDITRTPAIDDDSPDLSTHHQTTSITLFPSSSASIRPPPSSSGGGVGVAHQLFQASSTRPELHQCHRKVTDQMVKEENNLSNMFCGMDDQSGFWPWLEHQHFN 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g0843 306 PRINTS Lambda-repressor HTH signature 106 115 IPR000047 GO:0003677
Alju09g0843 306 PRINTS Lambda-repressor HTH signature 115 131 IPR000047 GO:0003677
Alju09g0843 306 CDD homeodomain 80 136 IPR001356 GO:0003677
Alju09g0843 306 FunFam Homeobox-leucine zipper protein ATHB-13 72 139 - -
Alju09g0843 306 SMART HOX_1 78 139 IPR001356 GO:0003677
Alju09g0843 306 Pfam Homeobox associated leucine zipper 135 175 IPR003106 GO:0006355|GO:0043565
Alju09g0843 306 MobiDBLite consensus disorder prediction 221 242 - -
Alju09g0843 306 MobiDBLite consensus disorder prediction 212 250 - -
Alju09g0843 306 SUPERFAMILY Homeodomain-like 73 137 IPR009057 -
Alju09g0843 306 Gene3D - 72 141 - -
Alju09g0843 306 Pfam Homeodomain 80 133 IPR001356 GO:0003677
Alju09g0843 306 MobiDBLite consensus disorder prediction 63 82 - -
Alju09g0843 306 ProSiteProfiles 'Homeobox' domain profile. 75 135 IPR001356 GO:0003677
Alju09g0843 306 ProSitePatterns 'Homeobox' domain signature. 110 133 IPR017970 GO:0000981|GO:0006355
Alju09g0843 306 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 66 261 IPR045224 GO:0003700
Alju09g0843 306 Coils Coil 127 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g0843 Alju-ChrAlju09 21491372 21492704 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g0843 1 306 Homeobox Transcription Factor Family AT1G69780 61.218 5.55e-120 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Alju09g0843 Homeodomain 1.6e-15 CL0123